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  5. Cpa|evm.model.tig00020629.120

Cpa|evm.model.tig00020629.120 (tig00020629_g12446.t1)


Aliases : tig00020629_g12446.t1

Description : Probable histidine kinase 3 OS=Oryza sativa subsp. indica


Gene families : OG_01_0001328 (OrthoFinder) Phylogenetic Tree(s): OG0001328_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020629.120
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Sro1060_g236670.1 Contig1660.g14960 Sensor kinase/phosphatase LuxQ 0.01 OrthoFinder
Sro112_g055500.1 Contig1575.g14275 Sensor kinase/phosphatase LuxQ 0.02 OrthoFinder
Sro12_g009250.1 Contig2293.g18945 Sensor protein kinase WalK (Fragment) 0.01 OrthoFinder
Sro1705_g292400.1 Contig4149.g31668 Hypothetical protein 0.03 OrthoFinder
Sro2335_g323820.1 Contig3717.g28592 Autoinducer 1 sensor kinase/phosphatase LuxN 0.02 OrthoFinder
Sro363_g126940.1 Contig698.g8133 Sensor kinase/phosphatase LuxQ 0.02 OrthoFinder
Sro394_g133870.1 Contig4153.g31717 Sensor kinase/phosphatase LuxQ 0.02 OrthoFinder
Sro60_g034610.1 Contig797.g8938 Sensor kinase/phosphatase LuxQ 0.01 OrthoFinder
Sro915_g219740.1 Contig3226.g25524 Sensor kinase/phosphatase LuxQ 0.02 OrthoFinder
Sro96_g049610.1 Contig3763.g28887 Respiration control sensor protein ArcB 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR003661 HisK_dim/P 94 173
IPR003594 HATPase_C 222 359
IPR001789 Sig_transdc_resp-reg_receiver 538 664
No external refs found!