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  5. Cpa|evm.model.tig00020603.25

Cpa|evm.model.tig00020603.25 (tig00020603_g11758.t1)


Aliases : tig00020603_g11758.t1

Description : Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis thaliana


Gene families : OG_01_0004449 (OrthoFinder) Phylogenetic Tree(s): OG0004449_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020603.25
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
PTI_02G01480.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_79506 79506 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004615 phosphomannomutase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
CC GO:0005788 endoplasmic reticulum lumen IEP Enrichment
CC GO:0005815 microtubule organizing center IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 35 105
No external refs found!