SymbC1.scaffold4.957 (4.957)

Aliases : 4.957

Description : RNA polymerase sigma-70 region 2; PurE domain; Phosphoribosylaminoimidazole carboxylase, C-terminal domain; Peptidase S8/S53 domain; RNA polymerase sigma factor 70, region 4 type 2; ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type [Interproscan].

Gene families : OG_01_0002800 (OrthoFinder) Phylogenetic Tree(s): OG0002800_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.957
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Vocar.0006s0173.1 32893908 Phosphoribosylaminoimidazole carboxylase, C-terminal... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
MF GO:0004252 serine-type endopeptidase activity IEA Interproscan
BP GO:0006189 'de novo' IMP biosynthetic process IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0008198 ferrous iron binding IEP Enrichment
MF GO:0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0015562 efflux transmembrane transporter activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR040686 PurK_C 317 379
IPR000209 Peptidase_S8/S53_dom 1894 2141
IPR003135 ATP-grasp_carboxylate-amine 125 291
IPR007627 RNA_pol_sigma70_r2 631 696
IPR000209 Peptidase_S8/S53_dom 1048 1335
IPR000031 PurE_dom 396 518
IPR013249 RNA_pol_sigma70_r4_t2 728 780
No external refs found!