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  5. SymbC1.scaffold2866.4

SymbC1.scaffold2866.4 (2866.4)


Aliases : 2866.4

Description : La-type HTH domain; Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan].


Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2866.4
Cluster HCCA: Cluster_434

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499911.1_8864 KAA8499911 5'-3' exoribonuclease 2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0001534 radial spoke IEP Enrichment
BP GO:0003341 cilium movement IEP Enrichment
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0030030 cell projection organization IEP Enrichment
BP GO:0030031 cell projection assembly IEP Enrichment
BP GO:0044782 cilium organization IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
BP GO:0060271 cilium assembly IEP Enrichment
BP GO:0060294 cilium movement involved in cell motility IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0120031 plasma membrane bounded cell projection assembly IEP Enrichment
BP GO:0120036 plasma membrane bounded cell projection organization IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR041412 Xrn1_helical 269 340
IPR041412 Xrn1_helical 613 738
IPR006630 La_HTH 476 529
IPR004859 Put_53exo 1 211
No external refs found!