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  5. SymbC1.scaffold1217.3

SymbC1.scaffold1217.3 (1217.3)


Aliases : 1217.3

Description : Leucine rich repeat 4; Leucine-rich repeat; Ion transport domain [Interproscan].


Gene families : OG_01_0000149 (OrthoFinder) Phylogenetic Tree(s): OG0000149_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1217.3
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold179.5 179.5 Ion transport domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold563.11 563.11 Ion transport domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0004336 galactosylceramidase activity IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0006665 sphingolipid metabolic process IEP Enrichment
BP GO:0006672 ceramide metabolic process IEP Enrichment
BP GO:0006677 glycosylceramide metabolic process IEP Enrichment
BP GO:0006681 galactosylceramide metabolic process IEP Enrichment
BP GO:0006683 galactosylceramide catabolic process IEP Enrichment
BP GO:0006687 glycosphingolipid metabolic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0019374 galactolipid metabolic process IEP Enrichment
BP GO:0019376 galactolipid catabolic process IEP Enrichment
BP GO:0019377 glycolipid catabolic process IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
BP GO:0030149 sphingolipid catabolic process IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0044242 cellular lipid catabolic process IEP Enrichment
BP GO:0046466 membrane lipid catabolic process IEP Enrichment
BP GO:0046477 glycosylceramide catabolic process IEP Enrichment
BP GO:0046479 glycosphingolipid catabolic process IEP Enrichment
BP GO:0046514 ceramide catabolic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 815 871
IPR001611 Leu-rich_rpt 677 733
IPR001611 Leu-rich_rpt 1039 1097
IPR005821 Ion_trans_dom 23 228
IPR025875 Leu-rich_rpt_4 994 1032
No external refs found!