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  5. SymbC1.scaffold1.947

SymbC1.scaffold1.947 (1.947)


Aliases : 1.947

Description : Domain of unknown function DUF1588; Domain of unknown function DUF1587; Domain of unknown function DUF1592; Peptidase M36, fungalysin; Domain of unknown function DUF1595; FTP domain; Peptidase S8/S53 domain; Cytochrome c-like domain; Peptidase, C-terminal, archaeal/bacterial; Protein of unknown function DUF1552; Cytochrome C, Planctomycete-type [Interproscan].


Gene families : OG_01_0000537 (OrthoFinder) Phylogenetic Tree(s): OG0000537_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.947
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1232 1.1232 Domain of unknown function DUF1588; Domain of unknown... 0.02 OrthoFinder
SymbC1.scaffold1.1324 1.1324 RNA polymerase sigma-70 region 2; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold1.1486 1.1486 Domain of unknown function DUF1588; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold1.2120 1.2120 Domain of unknown function DUF1588; Ankyrin... 0.04 OrthoFinder
SymbC1.scaffold16.150 16.150 Domain of unknown function DUF1588; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold16.276 16.276 Domain of unknown function DUF1588; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold2.466 2.466 Domain of unknown function DUF1588; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold2.867 2.867 Domain of unknown function DUF1588; Carbohydrate binding... 0.02 OrthoFinder
SymbC1.scaffold2.868 2.868 GGDEF domain; Protein of unknown function DUF1552 [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold20793.1 20793.1 Domain of unknown function DUF1588; Domain of unknown... 0.05 OrthoFinder
SymbC1.scaffold24882.1 24882.1 Protein of unknown function DUF1552 [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0004252 serine-type endopeptidase activity IEA Interproscan
CC GO:0005615 extracellular space IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0009055 electron transfer activity IEA Interproscan
MF GO:0020037 heme binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004803 transposase activity IEP Enrichment
BP GO:0006081 cellular aldehyde metabolic process IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006730 one-carbon metabolic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Enrichment
MF GO:0015159 polysaccharide transmembrane transporter activity IEP Enrichment
BP GO:0015774 polysaccharide transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Enrichment
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP Enrichment
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP Enrichment
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR000209 Peptidase_S8/S53_dom 1188 1457
IPR013043 DUF1595 3740 3800
IPR013043 DUF1595 4946 5006
IPR007280 Peptidase_C_arc/bac 1484 1558
IPR011429 Cyt_c_Planctomycete-type 3338 3385
IPR011096 FTP_domain 119 169
IPR009056 Cyt_c-like_dom 4572 4641
IPR013042 DUF1592 3817 3943
IPR013042 DUF1592 5019 5146
IPR001842 Peptidase_M36 294 657
IPR013039 DUF1588 3961 4059
IPR013039 DUF1588 5165 5259
IPR013036 DUF1587 4662 4726
IPR013036 DUF1587 3423 3487
IPR011447 DUF1552 5355 5643
IPR011447 DUF1552 4162 4456
No external refs found!