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  5. SymbC1.scaffold1.2

SymbC1.scaffold1.2 (1.2)


Aliases : 1.2

Description : RapA2, cadherin-like domain; Bacterial Ig domain; RTX calcium-binding nonapeptide repeat; PA14 domain [Interproscan].


Gene families : OG_01_0002000 (OrthoFinder) Phylogenetic Tree(s): OG0002000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.2
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.578 1.578 RTX calcium-binding nonapeptide repeat; RapA2,... 0.05 OrthoFinder
SymbC1.scaffold23899.1 23899.1 Rieske [2Fe-2S] iron-sulphur domain; SGNH hydrolase-type... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
InterPro domains Description Start Stop
IPR001343 Hemolysn_Ca-bd 2133 2166
IPR001343 Hemolysn_Ca-bd 2042 2075
IPR001343 Hemolysn_Ca-bd 2078 2113
IPR011658 PA14_dom 809 894
IPR040853 RapA2_cadherin-like 623 700
No external refs found!