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  5. SymbC1.scaffold1.1018

SymbC1.scaffold1.1018 (1.1018)


Aliases : 1.1018

Description : Fn3 associated repeat; Spore coat protein CotH; Domain of unknown function DUF4976; DNA2/NAM7 helicase-like, AAA domain; Orc1-like, AAA ATPase domain; Chitobiase/beta-hexosaminidase C-terminal domain; Lamin tail domain; Signal transduction histidine kinase, dimerisation/phosphoacceptor domain; Sulfatase, N-terminal; Histidine kinase/HSP90-like ATPase; Signal transduction response regulator, receiver domain; Protein of unknown function DUF112, transmembrane; Protein kinase domain; DNA2/NAM7 helicase, AAA domain; Bordetella uptake gene [Interproscan].


Gene families : OG_01_0000385 (OrthoFinder) Phylogenetic Tree(s): OG0000385_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.1018
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
OT_07G00390.1 No alias DNA2/NAM7 helicase-like, AAA domain; DNA2/NAM7 helicase,... 0.01 OrthoFinder
lcl|BLLF01000854.1_cds_GFH15464.1_9941 HaLaN_11697, GFH15464 R3H domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
MF GO:0004672 protein kinase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006468 protein phosphorylation IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
MF GO:0008484 sulfuric ester hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0004057 arginyltransferase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
BP GO:0016598 protein arginylation IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
MF GO:0043546 molybdopterin cofactor binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR032506 DUF4976 3178 3273
IPR001322 Lamin_tail_dom 3916 4020
IPR001322 Lamin_tail_dom 5623 5688
IPR001322 Lamin_tail_dom 5300 5428
IPR001322 Lamin_tail_dom 5478 5571
IPR002823 DUF112_TM 2441 2842
IPR000917 Sulfatase_N 2909 3174
IPR041664 AAA_16 338 506
IPR000719 Prot_kinase_dom 60 302
IPR041679 DNA2/NAM7-like_C 3670 3863
IPR014867 Spore_coat_CotH 4843 5115
IPR005064 BUG 2052 2309
IPR041677 DNA2/NAM7_AAA_11 3443 3661
IPR003661 HisK_dim/P 1491 1556
IPR003594 HATPase_C 1604 1717
IPR026876 Fn3_assoc_repeat 5231 5292
IPR001789 Sig_transdc_resp-reg_receiver 1879 1992
No external refs found!