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  5. Cz12g21250.t1

Cz12g21250.t1


Description : WD40 repeat; BOP1, N-terminal domain [Interproscan].


Gene families : OG_01_0003084 (OrthoFinder) Phylogenetic Tree(s): OG0003084_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz12g21250.t1
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000382.38 tig00000382_g24574.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cre10.g417950 30790890 Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder
Dusal.1024s00003.1 33196169 BOP1, N-terminal domain; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Dusal.1024s00004.1 33196168 WD40 repeat [Interproscan]. 0.04 OrthoFinder
EOD13489 No alias WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.05 OrthoFinder
PTI_28G01560.1 No alias BOP1, N-terminal domain; WD40 repeat [Interproscan]. 0.11 OrthoFinder
Sro345_g122580.1 Contig2266.g18817 Ribosome biogenesis protein BOP1 0.03 OrthoFinder
TP23G00340.1 No alias WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.06 OrthoFinder
Transcript_contig_58163 58163 BOP1, N-terminal domain; WD40 repeat [Interproscan]. 0.04 OrthoFinder
Transcript_contig_82257 82257 WD40 repeat [Interproscan]. 0.05 OrthoFinder
Vocar.0025s0201.1 32898403 WD40 repeat; BOP1, N-terminal domain [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000633.1_cds_GFH13620.1_8097 HaLaN_09545, GFH13620 Ribosome biogenesis protein BOP1 homolog 0.05 OrthoFinder
lcl|BLLF01001331.1_cds_GFH18637.1_13114 HaLaN_15473, GFH18637 Ribosome biogenesis protein BOP1 homolog 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59011.1_7240 PRW59011 Ribosome biogenesis BOP1-like protein 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006366 transcription by RNA polymerase II IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR012953 BOP1_N_dom 123 382
IPR001680 WD40_repeat 703 741
IPR001680 WD40_repeat 617 641
IPR001680 WD40_repeat 389 420
No external refs found!