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Aliases : tig00001065_g6716.t1
Description : Pumilio homolog 1 OS=Arabidopsis thaliana
Gene families : OG_01_0000430 (OrthoFinder) Phylogenetic Tree(s): OG0000430_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00001065.14 | |
| Cluster | HCCA: Cluster_45 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| SymbC1.scaffold4817.1 | 4817.1 | Hypothetical protein | 0.03 | OrthoFinder | |
| lcl|LHPG02000014.1_cds_PRW39206.1_2591 | PRW39206 | ARM repeat-containing | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Enrichment |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
| MF | GO:0004749 | ribose phosphate diphosphokinase activity | IEP | Enrichment |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016407 | acetyltransferase activity | IEP | Enrichment |
| MF | GO:0016410 | N-acyltransferase activity | IEP | Enrichment |
| MF | GO:0016597 | amino acid binding | IEP | Enrichment |
| MF | GO:0016740 | transferase activity | IEP | Enrichment |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Enrichment |
| MF | GO:0016746 | acyltransferase activity | IEP | Enrichment |
| MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | Enrichment |
| MF | GO:0016778 | diphosphotransferase activity | IEP | Enrichment |
| MF | GO:0017134 | fibroblast growth factor binding | IEP | Enrichment |
| MF | GO:0019838 | growth factor binding | IEP | Enrichment |
| BP | GO:0030490 | maturation of SSU-rRNA | IEP | Enrichment |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
| MF | GO:0043177 | organic acid binding | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
| MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001313 | Pumilio_RNA-bd_rpt | 113 | 143 |
| IPR001313 | Pumilio_RNA-bd_rpt | 78 | 107 |
| IPR001313 | Pumilio_RNA-bd_rpt | 306 | 332 |
| IPR001313 | Pumilio_RNA-bd_rpt | 187 | 218 |
| IPR001313 | Pumilio_RNA-bd_rpt | 257 | 289 |
| IPR001313 | Pumilio_RNA-bd_rpt | 149 | 181 |
| IPR001313 | Pumilio_RNA-bd_rpt | 227 | 248 |
| IPR001313 | Pumilio_RNA-bd_rpt | 51 | 74 |
| No external refs found! |