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  5. Cz04g25190.t1

Cz04g25190.t1


Description : U box domain; RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000010 (OrthoFinder) Phylogenetic Tree(s): OG0000010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g25190.t1
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Cre03.g178550 30787129 Dynein assembly factor with WDR repeat domains 1... 0.02 OrthoFinder
Cre17.g743847 30782211 No description available 0.02 OrthoFinder
EOD19395 No alias U box domain [Interproscan]. 0.01 OrthoFinder
OT_09G00020.1 No alias U box domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54040 54040 U box domain; WD40 repeat [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0434.1 32891111 Ankyrin repeat-containing domain; Ankyrin repeats (many... 0.03 OrthoFinder
XM_002502612.1 MICPUN_58878, 58878 U box domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000032.1_cds_GFH06298.1_775 HaLaN_00905, GFH06298 U-box domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60572.1_4222 PRW60572 Flowering time control FPA isoform A 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56411.1_9600 PRW56411 Ankyrin repeat 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0004857 enzyme inhibitor activity IEP Enrichment
MF GO:0004866 endopeptidase inhibitor activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0019310 inositol catabolic process IEP Enrichment
MF GO:0030414 peptidase inhibitor activity IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0044275 cellular carbohydrate catabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0050113 inositol oxygenase activity IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
MF GO:0061134 peptidase regulator activity IEP Enrichment
MF GO:0061135 endopeptidase regulator activity IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003613 Ubox_domain 2122 2176
IPR000504 RRM_dom 1385 1443
IPR000504 RRM_dom 1610 1666
No external refs found!