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  5. Cz03g19050.t1

Cz03g19050.t1


Description : DNA-directed DNA polymerase, family A, palm domain; DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000615 (OrthoFinder) Phylogenetic Tree(s): OG0000615_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g19050.t1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
OT_05G00350.1 No alias DNA-directed DNA polymerase, family A, palm domain... 0.03 OrthoFinder
Transcript_contig_54059 54059 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
XM_002501517.1 MICPUN_58249, 58249 DEAD/DEAH box helicase 0.02 OrthoFinder
lcl|BLLF01000789.1_cds_GFH14972.1_9449 HaLaN_11116, GFH14972 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44411.1_2184 PRW44411 Helicase and polymerase-containing TEBICHI isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
BP GO:0030832 regulation of actin filament length IEP Enrichment
BP GO:0030833 regulation of actin filament polymerization IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0032271 regulation of protein polymerization IEP Enrichment
BP GO:0032535 regulation of cellular component size IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0032956 regulation of actin cytoskeleton organization IEP Enrichment
BP GO:0032970 regulation of actin filament-based process IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
BP GO:0043254 regulation of protein-containing complex assembly IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051493 regulation of cytoskeleton organization IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0090066 regulation of anatomical structure size IEP Enrichment
BP GO:0110053 regulation of actin filament organization IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
BP GO:1902903 regulation of supramolecular fiber organization IEP Enrichment
InterPro domains Description Start Stop
IPR001098 DNA-dir_DNA_pol_A_palm_dom 2341 2782
IPR011545 DEAD/DEAH_box_helicase_dom 941 1175
IPR001650 Helicase_C 1237 1384
No external refs found!