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  5. Cz03g13040.t1

Cz03g13040.t1


Description : RNA polymerase II, heptapeptide repeat, eukaryotic; RNA polymerase Rpb1, domain 4; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1, domain 7; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 3 [Interproscan].


Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g13040.t1
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.15 tig00000241_g20874.t1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder
Cpa|evm.model.tig00022075.5 tig00022075_g23567.t1 DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cpa|evm.model.tig00022075.6 tig00022075_g23568.t1 DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre03.g165750 30786879 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder
Cre16.g680900 30777306, RPB1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder
Dusal.0157s00011.1 33200035 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.05 OrthoFinder
Dusal.0157s00013.1 33200051 RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1,... 0.04 OrthoFinder
Dusal.0197s00003.1 33188524 RNA polymerase Rpb1, domain 1; RNA polymerase, alpha... 0.03 OrthoFinder
EOD16843 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.03 OrthoFinder
EOD21342 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.04 OrthoFinder
OT_02G03580.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
OT_10G01340.1 No alias RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
PTI_12G01840.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.02 OrthoFinder
PTI_20G02670.1 No alias RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.04 OrthoFinder
XM_002501986.1 MICPUN_82079, 82079 RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,... 0.02 OrthoFinder
XM_002503483.1 MICPUN_94662, 94662 RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1,... 0.02 OrthoFinder
XM_003057453.1 MicpuC2_46863, 46863 RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58100.1_7994 PRW58100 DNA-directed RNA polymerase III largest subunit 0.03 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57000.1_9043 PRW57000 DNA-directed RNA polymerase II subunit 1 0.03 OrthoFinder
lcl|VRMN01000018.1_cds_KAA8490883.1_5655 KAA8490883 DNA-directed RNA polymerase II subunit 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
BP GO:0006366 transcription by RNA polymerase II IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR000684 RNA_pol_II_repeat_euk 1693 1706
IPR000684 RNA_pol_II_repeat_euk 1595 1608
IPR000684 RNA_pol_II_repeat_euk 1523 1540
IPR000684 RNA_pol_II_repeat_euk 1541 1554
IPR000684 RNA_pol_II_repeat_euk 1569 1582
IPR000684 RNA_pol_II_repeat_euk 1555 1568
IPR000684 RNA_pol_II_repeat_euk 1735 1748
IPR000684 RNA_pol_II_repeat_euk 1679 1692
IPR000684 RNA_pol_II_repeat_euk 1609 1622
IPR000684 RNA_pol_II_repeat_euk 1637 1649
IPR000684 RNA_pol_II_repeat_euk 1651 1664
IPR000684 RNA_pol_II_repeat_euk 1623 1636
IPR000684 RNA_pol_II_repeat_euk 1721 1734
IPR000684 RNA_pol_II_repeat_euk 1707 1720
IPR000684 RNA_pol_II_repeat_euk 1583 1594
IPR007075 RNA_pol_Rpb1_6 870 1055
IPR007080 RNA_pol_Rpb1_1 15 330
IPR007073 RNA_pol_Rpb1_7 1140 1277
IPR007083 RNA_pol_Rpb1_4 692 797
IPR000722 RNA_pol_asu 332 500
IPR007066 RNA_pol_Rpb1_3 503 666
IPR007081 RNA_pol_Rpb1_5 804 1397
No external refs found!