1. Home
  2. Species
  3. Chromochloris zofingiensis
  4. Sequence
  5. Cz02g19210.t1

Cz02g19210.t1


Description : VPS13, repeated coiled region; Vacuolar protein sorting-associated protein 13, second N-terminal domain; Vacuolar protein sorting-associated protein 62; Vacuolar protein sorting-associated protein 13, N-terminal domain [Interproscan].


Gene families : OG_01_0000454 (OrthoFinder) Phylogenetic Tree(s): OG0000454_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz02g19210.t1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.91 tig00000042_g15491.t1 No description available 0.09 OrthoFinder
Cpa|evm.model.tig00000459.51 tig00000459_g1113.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00000615.84 tig00000615_g2613.t1 No description available 0.04 OrthoFinder
Cpa|evm.model.tig00001343.3 tig00001343_g8327.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00020710.86 tig00020710_g13343.t1 No description available 0.02 OrthoFinder
Cre12.g483500 30792128 No description available 0.02 OrthoFinder
Cre17.g727600 30782771 No description available 0.03 OrthoFinder
Cre17.g728250 30782292 No description available 0.03 OrthoFinder
Dusal.0595s00012.1 33191197 Vacuolar protein sorting-associated protein 13,... 0.04 OrthoFinder
EOD06777 No alias Vacuolar protein sorting-associated protein 13,... 0.01 OrthoFinder
EOD25591 No alias Vacuolar protein sorting-associated protein 13,... 0.02 OrthoFinder
OT_03G05120.1 No alias Vacuolar protein sorting-associated protein 13,... 0.02 OrthoFinder
OT_03G05620.1 No alias Vacuolar protein sorting-associated protein 13,... 0.04 OrthoFinder
OT_15G01640.1 No alias Vacuolar protein sorting-associated protein 13, second... 0.05 OrthoFinder
Vocar.0019s0264.1 32892799 Vacuolar protein sorting-associated protein 13,... 0.03 OrthoFinder
XM_002506972.1 MICPUN_54783, 54783 Vacuolar protein sorting-associated protein 13, second... 0.02 OrthoFinder
lcl|BLLF01000617.1_cds_GFH13477.1_7954 HaLaN_09370, GFH13477 Vacuolar protein sorting-associated protein 13,... 0.02 OrthoFinder
lcl|BLLF01000617.1_cds_GFH13478.1_7955 HaLaN_09371, GFH13478 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR009291 Vps62 2598 2736
IPR031642 VPS13_mid_rpt 591 825
IPR031646 VPS13_N2 158 390
IPR026854 VPS13-like_N 2 102
No external refs found!