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  5. Cpa|evm.model.tig00000970.30

Cpa|evm.model.tig00000970.30 (tig00000970_g5849.t1)


Aliases : tig00000970_g5849.t1

Description : Cell cycle.interphase.DNA replication.elongation.DNA polymerase epsilon complex.POL2/POLE1 catalytic component


Gene families : OG_01_0002052 (OrthoFinder) Phylogenetic Tree(s): OG0002052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000970.30
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cre03.g179961 30788184 Cell cycle.interphase.DNA replication.elongation.DNA... 0.07 OrthoFinder
Cz01g29080.t1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.03 OrthoFinder
Dusal.0146s00025.1 33199498 DNA-directed DNA polymerase, family B, multifunctional... 0.03 OrthoFinder
EOD04907 No alias Hypothetical protein [Ensembl]. 0.03 OrthoFinder
EOD06573 No alias DNA polymerase epsilon catalytic subunit A/1 [Ensembl]. 0.04 OrthoFinder
OT_11G01900.1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.02 OrthoFinder
PTI_27G01310.1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.03 OrthoFinder
Sro1830_g300310.1 Contig662.g7834 Epsilon catalytic subunit A 0.01 OrthoFinder
TP03G08210.1 No alias DNA-directed DNA polymerase, family B, exonuclease... 0.02 OrthoFinder
Transcript_contig_613 613 DNA-directed DNA polymerase, family B, exonuclease... 0.02 OrthoFinder
XM_002508999.1 MICPUN_63095, 63095 DNA polymerase epsilon, catalytic subunit A, C-terminal;... 0.03 OrthoFinder
lcl|BLLF01001835.1_cds_GFH21468.1_15945 HaLaN_18779, GFH21468 DNA polymerase epsilon catalytic subunit 0.02 OrthoFinder
lcl|BLLF01001835.1_cds_GFH21469.1_15946 HaLaN_18780, GFH21469 DNA polymerase epsilon catalytic subunit 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
BP GO:0010824 regulation of centrosome duplication IEP Enrichment
BP GO:0010826 negative regulation of centrosome duplication IEP Enrichment
BP GO:0010948 negative regulation of cell cycle process IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0030030 cell projection organization IEP Enrichment
BP GO:0030031 cell projection assembly IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032886 regulation of microtubule-based process IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
CC GO:0036038 MKS complex IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044782 cilium organization IEP Enrichment
BP GO:0045786 negative regulation of cell cycle IEP Enrichment
BP GO:0046605 regulation of centrosome cycle IEP Enrichment
BP GO:0046606 negative regulation of centrosome cycle IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051493 regulation of cytoskeleton organization IEP Enrichment
BP GO:0051494 negative regulation of cytoskeleton organization IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0060271 cilium assembly IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0120031 plasma membrane bounded cell projection assembly IEP Enrichment
BP GO:0120036 plasma membrane bounded cell projection organization IEP Enrichment
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 750 962
IPR013697 DNA_pol_e_suA_C 1475 1752
IPR006133 DNA-dir_DNA_pol_B_exonuc 45 372
No external refs found!