Cz01g21250.t1

Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].

Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz01g21250.t1
Cluster	HCCA: Cluster_62

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000158.84	tig00000158_g10189.t1	Solute transport.primary active transport.ABC...	0.02	OrthoFinder
Cpa\|evm.model.tig00020684.9	tig00020684_g12858.t1	Solute transport.primary active transport.ABC...	0.02	OrthoFinder
Cre07.g325761	30775279	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.03	OrthoFinder
EOD34349	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.03	OrthoFinder
OT_03G00040.1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.04	OrthoFinder
OT_07G01620.1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.02	OrthoFinder
Sro1322_g262550.1	Contig3764.g28905	Multiple drug resistance-associated protein-like transporter 1	0.02	OrthoFinder
Sro200_g084620.1	Contig201.g2353	Oligomycin resistance ATP-dependent permease YOR1	0.02	OrthoFinder
Sro61_g035030.1	Contig3112.g24756	Multiple drug resistance-associated protein-like transporter 1	0.02	OrthoFinder
SymbC1.scaffold7045.1	7045.1	ABC transporter-like; ABC transporter type 1,...	0.02	OrthoFinder
Vocar.0026s0119.1	32892596	ABC transporter-like; ABC transporter type 1,...	0.03	OrthoFinder
lcl\|BLLF01000553.1_cds_GFH12907.1_7384	HaLaN_08686, GFH12907	ABC transporter type 1, transmembrane domain; ABC...	0.04	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499894.1_8847	KAA8499894	Multidrug resistance-associated protein 1	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	Enrichment
MF	GO:0005506	iron ion binding	IEP	Enrichment
BP	GO:0006310	DNA recombination	IEP	Enrichment
BP	GO:0006468	protein phosphorylation	IEP	Enrichment
BP	GO:0006873	cellular ion homeostasis	IEP	Enrichment
BP	GO:0006875	cellular metal ion homeostasis	IEP	Enrichment
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Enrichment
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Enrichment
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
BP	GO:0019725	cellular homeostasis	IEP	Enrichment
MF	GO:0020037	heme binding	IEP	Enrichment
BP	GO:0030003	cellular cation homeostasis	IEP	Enrichment
BP	GO:0030026	cellular manganese ion homeostasis	IEP	Enrichment
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Enrichment
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Enrichment
BP	GO:0042592	homeostatic process	IEP	Enrichment
MF	GO:0046906	tetrapyrrole binding	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Enrichment
BP	GO:0048878	chemical homeostasis	IEP	Enrichment
BP	GO:0050801	ion homeostasis	IEP	Enrichment
BP	GO:0055065	metal ion homeostasis	IEP	Enrichment
BP	GO:0055071	manganese ion homeostasis	IEP	Enrichment
BP	GO:0055076	transition metal ion homeostasis	IEP	Enrichment
BP	GO:0055080	cation homeostasis	IEP	Enrichment
BP	GO:0055082	cellular chemical homeostasis	IEP	Enrichment
BP	GO:0098771	inorganic ion homeostasis	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	378	620
IPR003439	ABC_transporter-like_ATP-bd	710	857

External Links

No external refs found!

Cz01g21250.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation