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  5. Cpa|evm.model.tig00000944.38

Cpa|evm.model.tig00000944.38 (tig00000944_g5960.t1)


Aliases : tig00000944_g5960.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NSA2 maturation factor


Gene families : OG_01_0004536 (OrthoFinder) Phylogenetic Tree(s): OG0004536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000944.38
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
EOD09645 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.04 OrthoFinder
OT_17G02370.1 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.04 OrthoFinder
PTI_08G03640.1 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.08 OrthoFinder
Sro1010_g230920.1 Contig4560.g34057 Ribosome biogenesis protein NSA2 homolog 0.09 OrthoFinder
TP06G05960.1 No alias Ribosomal protein S8e/ribosomal biogenesis NSA2 [Interproscan]. 0.07 OrthoFinder
XM_002504902.1 MICPUN_62565, 62565 Ribosomal protein S8E 0.05 OrthoFinder
XM_003060620.1 MicpuC2_44560, 44560 Ribosomal protein S8e 0.07 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33978.1_3041 PRW33978 Ribosome biogenesis NSA2-like protein 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497326.1_1055 KAA8497326 Ribosome biogenesis protein NSA2-like 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 33 259
No external refs found!