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Aliases : tig00000944_g5940.t1
Description : Chromatin organisation.histones.H2B-type histone
Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000944.18 | |
| Cluster | HCCA: Cluster_40 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre06.g264900 | 30779615, HTB13 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cre06.g271376 | 30780144 | Chromatin organisation.histones.H2B-type histone | 0.01 | OrthoFinder | |
| Cre06.g274250 | 30779155 | Chromatin organisation.histones.H2B-type histone | 0.01 | OrthoFinder | |
| Cre06.g276550 | 30778890, HTB23 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cre12.g504700 | 30793271 | Chromatin organisation.histones.H2B-type histone | 0.01 | OrthoFinder | |
| Cre12.g506200 | 30793175 | Chromatin organisation.histones.H2B-type histone | 0.01 | OrthoFinder | |
| Cre13.g570050 | 30784307, HTB2 | Chromatin organisation.histones.H2B-type histone | 0.03 | OrthoFinder | |
| Cre13.g590750 | 30783880, HTB37 | Chromatin organisation.histones.H2B-type histone | 0.01 | OrthoFinder | |
| Cre13.g591200 | 30784473, HTB38 | Chromatin organisation.histones.H2B-type histone | 0.01 | OrthoFinder | |
| Cre17.g709150 | 30782749 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cre17.g710450 | 30782433 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cre17.g711750 | 30781954 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cre17.g713450 | 30782606 | Chromatin organisation.histones.H2B-type histone | 0.03 | OrthoFinder | |
| Cre17.g714050 | 30782614, HTB21 | Chromatin organisation.histones.H2B-type histone | 0.02 | OrthoFinder | |
| Cz02g02060.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| Cz05g04190.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Cz07g08190.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Cz08g27120.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Cz18g11110.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| EOD16252 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| EOD17479 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| EOD18484 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| EOD26824 | No alias | Putative histone H2B [Ensembl]. | 0.01 | OrthoFinder | |
| EOD41189 | No alias | Putative histone H2B [Ensembl]. | 0.01 | OrthoFinder | |
| OT_08G01920.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| OT_12G00920.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_06G02120.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| Sro1535_g280540.1 | Contig3021.g24091 | Histone H2B | 0.05 | OrthoFinder | |
| SymbC1.scaffold2305.4 | 2305.4 | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| TP05G07690.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| Transcript_contig_61848 | 61848 | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| XM_002501735.1 | MICPUN_81107, 81107 | Histone H2B | 0.01 | OrthoFinder | |
| XM_003058473.1 | MicpuC2_58125, 58125 | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| lcl|LHPG02000002.1_cds_PRW60378.1_4501 | PRW60378 | Histone H2B | 0.02 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW56968.1_9099 | PRW56968 | Histone | 0.03 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW57308.1_9005 | PRW57308 | Histone | 0.03 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW57429.1_9063 | PRW57429 | Histone | 0.03 | OrthoFinder | |
| lcl|LHPG02000018.1_cds_PRW32979.1_3762 | PRW32979 | Histone | 0.02 | OrthoFinder | |
| lcl|LHPG02000018.1_cds_PRW33046.1_3813 | PRW33046 | Histone | 0.04 | OrthoFinder | |
| lcl|LHPG02000018.1_cds_PRW33072.1_3738 | PRW33072 | Histone | 0.02 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8498015.1_6968 | KAA8498015 | Histone H2B type 1-M | 0.01 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| BP | GO:0000278 | mitotic cell cycle | IEP | Enrichment |
| CC | GO:0000775 | chromosome, centromeric region | IEP | Enrichment |
| CC | GO:0000776 | kinetochore | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005509 | calcium ion binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005694 | chromosome | IEP | Enrichment |
| CC | GO:0005815 | microtubule organizing center | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006265 | DNA topological change | IEP | Enrichment |
| BP | GO:0006275 | regulation of DNA replication | IEP | Enrichment |
| BP | GO:0006325 | chromatin organization | IEP | Enrichment |
| BP | GO:0006334 | nucleosome assembly | IEP | Enrichment |
| BP | GO:0006996 | organelle organization | IEP | Enrichment |
| BP | GO:0007017 | microtubule-based process | IEP | Enrichment |
| BP | GO:0007049 | cell cycle | IEP | Enrichment |
| BP | GO:0007059 | chromosome segregation | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0008276 | protein methyltransferase activity | IEP | Enrichment |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
| BP | GO:0016043 | cellular component organization | IEP | Enrichment |
| MF | GO:0016209 | antioxidant activity | IEP | Enrichment |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0016853 | isomerase activity | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| BP | GO:0031144 | proteasome localization | IEP | Enrichment |
| CC | GO:0031262 | Ndc80 complex | IEP | Enrichment |
| BP | GO:0031503 | protein-containing complex localization | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0034613 | cellular protein localization | IEP | Enrichment |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0034629 | cellular protein-containing complex localization | IEP | Enrichment |
| BP | GO:0034728 | nucleosome organization | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0042054 | histone methyltransferase activity | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Enrichment |
| BP | GO:0051276 | chromosome organization | IEP | Enrichment |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Enrichment |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Enrichment |
| BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| CC | GO:0098687 | chromosomal region | IEP | Enrichment |
| CC | GO:0099080 | supramolecular complex | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007125 | Histone_H2A/H2B/H3 | 8 | 105 |
| No external refs found! |