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  5. Transcript_contig_90584

Transcript_contig_90584 (90584)


Aliases : 90584

Description : Ribosomal protein L19/L19e [Interproscan].


Gene families : OG_01_0002658 (OrthoFinder) Phylogenetic Tree(s): OG0002658_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_90584
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021181.1 tig00021181_g19305.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cre02.g075700 30785746, RPL19 Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder
Cz11g15180.t1 No alias Ribosomal protein L19/L19e [Interproscan]. 0.05 OrthoFinder
OT_02G02430.1 No alias Ribosomal protein L19/L19e [Interproscan]. 0.02 OrthoFinder
PTI_21G02720.1 No alias Ribosomal protein L19/L19e; Chlorophyll A-B binding... 0.06 OrthoFinder
Sro734_g194640.1 Contig3769.g28942 60S ribosomal protein L19 0.06 OrthoFinder
SymbC1.scaffold3953.6 3953.6 Ribosomal protein L19/L19e [Interproscan]. 0.02 OrthoFinder
TP02G08540.1 No alias Ribosomal protein L19/L19e [Interproscan]. 0.03 OrthoFinder
Vocar.0001s1683.1 32884888 Ribosomal protein L19/L19e [Interproscan]. 0.02 OrthoFinder
XM_002507605.1 MICPUN_112659, 112659 60S ribosomal protein L19 (RPL19) 0.04 OrthoFinder
XM_003055988.1 MicpuC2_49436, 49436 60S ribosomal protein L19 protein (RPL19) 0.02 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490961.1_6164 KAA8490961 60S ribosomal protein L19-2 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
CC GO:0035145 exon-exon junction complex IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR000196 Ribosomal_L19/L19e 4 116
No external refs found!