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  5. Transcript_contig_90264

Transcript_contig_90264 (90264)


Aliases : 90264

Description : CobW/HypB/UreG, nucleotide-binding domain [Interproscan].


Gene families : OG_01_0000111 (OrthoFinder) Phylogenetic Tree(s): OG0000111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_90264
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Cre16.g692901 30778072 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder
PTI_21G02060.1 No alias Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.01 OrthoFinder
SymbC1.scaffold100.4 100.4 Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.01 OrthoFinder
Vocar.0001s0414.1 32884474 CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.02 OrthoFinder
XM_002503571.1 MICPUN_91262, 91262 CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.01 OrthoFinder
lcl|BLLF01005918.1_cds_GFH31763.1_26240 HaLaN_30869, GFH31763 WW domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004421 hydroxymethylglutaryl-CoA synthase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 84 271
No external refs found!