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  5. Transcript_contig_89760

Transcript_contig_89760 (89760)


Aliases : 89760

Description : DNA polymerase V/Myb-binding protein 1A [Interproscan].


Gene families : OG_01_0003983 (OrthoFinder) Phylogenetic Tree(s): OG0003983_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_89760
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021108.9 tig00021108_g18299.t1 No description available 0.06 OrthoFinder
Cre01.g012350 30788907 No description available 0.11 OrthoFinder
Cz09g27060.t1 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.09 OrthoFinder
Dusal.0002s00021.1 33187998 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.02 OrthoFinder
EOD16648 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.03 OrthoFinder
OT_04G04090.1 No alias DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.06 OrthoFinder
Vocar.0002s0005.1 32890814 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.01 OrthoFinder
XM_002506074.1 MICPUN_104038, 104038 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.03 OrthoFinder
XM_003056723.1 MicpuC2_56167, 56167 DNA polymerase V/Myb-binding protein 1A [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01001343.1_cds_GFH18714.1_13191 HaLaN_15562, GFH18714 Expressed protein 0.05 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61325.1_498 PRW61325 DNA polymerase V 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0008134 transcription factor binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR007015 DNA_pol_V/MYBBP1A 6 110
No external refs found!