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  5. Transcript_contig_89662

Transcript_contig_89662 (89662)


Aliases : 89662

Description : Steroid receptor RNA activator-protein/coat protein complex II, Sec31 [Interproscan].


Gene families : OG_01_0001224 (OrthoFinder) Phylogenetic Tree(s): OG0001224_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_89662
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001154.3 tig00001154_g7268.t2 Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder
Cre12.g522450 30792584, SEC31 Vesicle trafficking.Coat protein II (COPII) coatomer... 0.03 OrthoFinder
Sro358_g125970.1 Contig1210.g11384 Transport protein SEC31 0.01 OrthoFinder
XM_003054920.1 MicpuC2_30836, 30836 Ancestral coatomer element 1, Sec16/Sec31; WD40 repeat... 0.01 OrthoFinder
lcl|BLLF01003617.1_cds_GFH27783.1_22260 HaLaN_26163, GFH27783 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008193 tRNA guanylyltransferase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR009917 SRA1/Sec31 73 205
No external refs found!