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  5. Cpa|evm.model.tig00000093.136

Cpa|evm.model.tig00000093.136 (tig00000093_g3562.t1)


Aliases : tig00000093_g3562.t1

Description : Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana


Gene families : OG_01_0001747 (OrthoFinder) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000093.136
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
Cz07g16060.t1 No alias Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;... 0.02 OrthoFinder
Dusal.0327s00002.1 33200457 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding;... 0.03 OrthoFinder
EOD10350 No alias PRO8NT domain [Interproscan]. 0.02 OrthoFinder
EOD24715 No alias PROCT domain; RNA recognition motif, spliceosomal PrP8;... 0.08 OrthoFinder
Sro281_g107170.1 Contig3786.g29056 Processing-splicing factor 8 0.02 OrthoFinder
SymbC1.scaffold760.3 760.3 PRO8NT domain; PROCN domain;... 0.02 OrthoFinder
TP02G09170.1 No alias PROCT domain; PROCN domain; RNA recognition motif,... 0.03 OrthoFinder
Transcript_contig_53842 53842 PROCT domain; Pre-mRNA-processing-splicing factor 8,... 0.02 OrthoFinder
XM_003061325.1 MicpuC2_48200, 48200 PROCN domain; PROCT domain; Pre-mRNA-processing-splicing... 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60964.1_258 PRW60964 Pre-mRNA-processing-splicing factor 8 isoform A 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0015936 coenzyme A metabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR012591 PRO8NT 49 159
No external refs found!