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  5. Cpa|evm.model.tig00000880.19

Cpa|evm.model.tig00000880.19 (tig00000880_g5175.t1)


Aliases : tig00000880_g5175.t1

Description : Protein STABILIZED1 OS=Arabidopsis thaliana


Gene families : OG_01_0001986 (OrthoFinder) Phylogenetic Tree(s): OG0001986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000880.19
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Cre14.g633650 30776534, PRP6 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
EOD07078 No alias Calcineurin-like phosphoesterase domain, ApaH type... 0.01 OrthoFinder
EOD22460 No alias Tetratricopeptide repeat; PRP1 splicing factor,... 0.03 OrthoFinder
Sro987_g228260.1 Contig1137.g10933 mRNA-processing factor 6 0.02 OrthoFinder
Transcript_contig_56067 56067 PRP1 splicing factor, N-terminal [Interproscan]. 0.01 OrthoFinder
Vocar.0022s0221.1 32891963 PRP1 splicing factor, N-terminal; Tetratricopeptide... 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56239.1_10024 PRW56239 STABILIZED1 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0016093 polyprenol metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017134 fibroblast growth factor binding IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0019348 dolichol metabolic process IEP Enrichment
MF GO:0019838 growth factor binding IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR010491 PRP1_N 18 49
IPR010491 PRP1_N 74 221
No external refs found!