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  5. Transcript_contig_79973

Transcript_contig_79973 (79973)


Aliases : 79973

Description : Ribosomal protein L5 eukaryotic/L18 archaeal [Interproscan].


Gene families : OG_01_0002830 (OrthoFinder) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_79973
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.49 tig00000194_g14777.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cre14.g621450 30776682, RPL5 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
Cz10g29210.t1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.03 OrthoFinder
Dusal.0029s00017.1 33203768 Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.06 OrthoFinder
EOD29298 No alias Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.02 OrthoFinder
EOD40079 No alias Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal... 0.02 OrthoFinder
OT_15G01250.1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.06 OrthoFinder
PTI_01G05820.1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.03 OrthoFinder
Sro872_g213940.1 Contig2262.g18776 60S ribosomal protein L5 0.07 OrthoFinder
SymbC1.scaffold1162.12 1162.12 Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.01 OrthoFinder
SymbC1.scaffold8671.2 8671.2 Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.01 OrthoFinder
TP18G00890.1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.05 OrthoFinder
XM_002501895.1 MICPUN_108173, 108173 Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.05 OrthoFinder
XM_003057549.1 MicpuC2_49536, 49536 Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.04 OrthoFinder
lcl|BLLF01000001.1_cds_GFH05536.1_13 HaLaN_00015, GFH05536 Ribosomal_L18_c domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20400.1_5627 PRW20400 60S ribosomal L5 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495592.1_1590 KAA8495592 60S ribosomal protein L5 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0008097 5S rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR005485 Rbsml_L5_euk/L18_arc 2 94
No external refs found!