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  5. Cpa|evm.model.tig00000865.27

Cpa|evm.model.tig00000865.27 (tig00000865_g5079.t1)


Aliases : tig00000865_g5079.t1

Description : DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana


Gene families : OG_01_0000386 (OrthoFinder) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000865.27
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
Cre17.g744147 30781910 RNA processing.RNA splicing.spliceosome... 0.07 OrthoFinder
Cz03g23200.t1 No alias Brr2, N-terminal helicase PWI domain; Sec63 domain;... 0.05 OrthoFinder
Dusal.0019s00002.1 33192520 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.07 OrthoFinder
Dusal.0467s00019.1 33194473 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.03 OrthoFinder
EOD12464 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.09 OrthoFinder
EOD14868 No alias Sec63 domain; Helicase, C-terminal; DEAD/DEAH box... 0.03 OrthoFinder
OT_08G02040.1 No alias Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.03 OrthoFinder
PTI_12G02760.1 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.03 OrthoFinder
Sro610_g175200.1 No alias Putative U5 small nuclear ribonucleoprotein 200 kDa helicase 0.05 OrthoFinder
SymbC1.scaffold291.12 291.12 DEAD/DEAH box helicase domain; Sec63 domain [Interproscan]. 0.02 OrthoFinder
TP07G05150.1 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.07 OrthoFinder
Transcript_contig_54253 54253 Brr2, N-terminal helicase PWI domain; Helicase,... 0.02 OrthoFinder
Transcript_contig_67850 67850 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.01 OrthoFinder
Vocar.0039s0093.1 32897827 Brr2, N-terminal helicase PWI domain; DEAD/DEAH box... 0.04 OrthoFinder
XM_002508192.1 MICPUN_84094, 84094 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.07 OrthoFinder
XM_003061475.1 MicpuC2_48293, 48293 Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.04 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56130.1_10381 PRW56130 U5 small nuclear ribonucleo 200 kDa helicase-like 0.06 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56254.1_10168 PRW56254 Putative ATP-dependent DNA helicase HFM1 isoform B 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 423 483
IPR041094 Brr2_helicase_PWI 240 326
No external refs found!