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  5. Transcript_contig_79177

Transcript_contig_79177 (79177)


Aliases : 79177

Description : Ribosomal protein S2 [Interproscan].


Gene families : OG_01_0002089 (OrthoFinder) Phylogenetic Tree(s): OG0002089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_79177
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cre10.g432800 30790737, RPSa Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder
Cz04g36090.t1 No alias Ribosomal protein S2 [Interproscan]. 0.02 OrthoFinder
Dusal.0160s00027.1 33188334 Ribosomal protein S2 [Interproscan]. 0.04 OrthoFinder
EOD15394 No alias 40S ribosomal protein SA, C-terminal domain; Ribosomal... 0.03 OrthoFinder
OT_03G03280.1 No alias 40S ribosomal protein SA, C-terminal domain; Ribosomal... 0.05 OrthoFinder
PTI_12G01500.1 No alias Ribosomal protein S2 [Interproscan]. 0.05 OrthoFinder
Sro120_g058380.1 Contig2411.g19716 40S ribosomal protein SA 0.07 OrthoFinder
SymbC1.scaffold3021.4 3021.4 Ribosomal protein S2 [Interproscan]. 0.01 OrthoFinder
TP03G06220.1 No alias Ribosomal protein S2 [Interproscan]. 0.04 OrthoFinder
XM_003055196.1 MicpuC2_13384, 13384 Ribosomal protein S2 [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499119.1_8072 KAA8499119 40S ribosomal protein SA 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001865 Ribosomal_S2 108 177
No external refs found!