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  5. Transcript_contig_78423

Transcript_contig_78423 (78423)


Aliases : 78423

Description : ABC transporter-like [Interproscan].


Gene families : OG_01_0000347 (OrthoFinder) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78423
Cluster HCCA: Cluster_176

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.83 tig00000194_g14815.t1 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000269.102 tig00000269_g23763.t1 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre06.g265100 30779138 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre08.g372250 30774146 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz05g11180.t1 No alias ABC-transporter extension domain; ABC transporter-like... 0.04 OrthoFinder
Dusal.0093s00028.1 33185326 ABC transporter-like [Interproscan]. 0.01 OrthoFinder
EOD15967 No alias ABC transporter-like; ABC-transporter extension domain... 0.02 OrthoFinder
EOD42114 No alias ABC transporter-like; ABC transporter Uup, C-terminal... 0.01 OrthoFinder
OT_04G00900.1 No alias ABC-transporter extension domain; ABC transporter-like... 0.02 OrthoFinder
Sro1_g000580.1 Contig3007.g23973 ATP-binding protein ChvD (Fragment) 0.01 OrthoFinder
SymbC1.scaffold21935.1 21935.1 ABC transporter-like; ABC-transporter extension domain... 0.01 OrthoFinder
SymbC1.scaffold4.1435 4.1435 ABC transporter-like; NYN domain, limkain-b1-type;... 0.01 OrthoFinder
SymbC1.scaffold540.7 540.7 ABC transporter-like; ABC-transporter extension domain... 0.03 OrthoFinder
Vocar.0065s0003.1 32886855 ABC-transporter extension domain; ABC transporter-like... 0.03 OrthoFinder
XM_002508755.1 MICPUN_106164, 106164 ATP-binding cassette superfamily 0.03 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33209.1_3648 PRW33209 ABC transporter F family member 5 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 167 343
No external refs found!