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  5. Transcript_contig_78406

Transcript_contig_78406 (78406)


Aliases : 78406

Description : Calcium permeable stress-gated cation channel 1, N-terminal transmembrane domain [Interproscan].


Gene families : OG_01_0000148 (OrthoFinder) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78406
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000388.27 tig00000388_g24789.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00000655.11 tig00000655_g2838.t1 No description available 0.02 OrthoFinder
Cre08.g360500 30773726, ERM2 CSC1-like protein At1g62320 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz09g17130.t1 No alias Calcium-dependent channel, 7TM region, putative... 0.02 OrthoFinder
Cz10g15200.t1 No alias Calcium-dependent channel, 7TM region, putative... 0.01 OrthoFinder
Dusal.0252s00021.1 33187322 Calcium-dependent channel, 7TM region, putative... 0.01 OrthoFinder
OT_17G00990.1 No alias Calcium-dependent channel, 7TM region, putative... 0.01 OrthoFinder
Transcript_contig_1168 1168 Calcium-dependent channel, 7TM region, putative... 0.01 OrthoFinder
Vocar.0003s0237.1 32888905 Calcium permeable stress-gated cation channel 1,... 0.01 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45463.1_1259 PRW45463 ERD4-related membrane 0.01 OrthoFinder
lcl|LHPG02000029.1_cds_PRW05771.1_6062 PRW05771 ERD4-related membrane 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
InterPro domains Description Start Stop
IPR032880 Csc1_N 68 230
No external refs found!