Transcript_contig_78321 (78321)


Aliases : 78321

Description : CCAAT-binding factor [Interproscan].


Gene families : OG_01_0002091 (OrthoFinder) Phylogenetic Tree(s): OG0002091_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78321
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021293.22 tig00021293_g20014.t1 No description available 0.05 OrthoFinder
Cpa|evm.model.tig00021293.23 tig00021293_g20014.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder
Cre10.g459600 30790609 Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder
Cz08g12220.t1 No alias Hypothetical protein 0.06 OrthoFinder
Cz08g12230.t1 No alias Hypothetical protein 0.1 OrthoFinder
Cz08g12240.t1 No alias CCAAT-binding factor [Interproscan]. 0.11 OrthoFinder
Dusal.0293s00003.1 33190184 CCAAT-binding factor [Interproscan]. 0.06 OrthoFinder
EOD11177 No alias CCAAT-binding factor [Interproscan]. 0.08 OrthoFinder
EOD19601 No alias CCAAT-binding factor [Interproscan]. 0.02 OrthoFinder
OT_14G00120.1 No alias CCAAT-binding factor [Interproscan]. 0.04 OrthoFinder
PTI_33G00080.1 No alias CCAAT-binding factor [Interproscan]. 0.07 OrthoFinder
Sro381_g130900.1 Contig161.g1823 CCAAT/enhancer-binding protein zeta 0.06 OrthoFinder
TP01G09110.1 No alias CCAAT-binding factor [Interproscan]. 0.04 OrthoFinder
Vocar.0020s0188.1 32886771 CCAAT-binding factor [Interproscan]. 0.03 OrthoFinder
XM_003063700.1 MicpuC2_49035, 49035 CCAAT-binding factor [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01000229.1_cds_GFH09368.1_3845 HaLaN_04490, GFH09368 CBF domain-containing protein 0.04 OrthoFinder
lcl|BLLF01000932.1_cds_GFH16006.1_10483 HaLaN_12349, GFH16006 CBF domain-containing protein 0.02 OrthoFinder
lcl|BLLF01002098.1_cds_GFH22680.1_17157 HaLaN_20185, GFH22680 CBF domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32482.1_3998 PRW32482 CCAAT enhancer-binding zeta 0.08 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0004133 glycogen debranching enzyme activity IEP Enrichment
MF GO:0004134 4-alpha-glucanotransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 559 838
No external refs found!