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  5. Transcript_contig_78173

Transcript_contig_78173 (78173)


Aliases : 78173

Description : DNA (cytosine-5)-methyltransferase 1, replication foci domain; Bromo adjacent homology (BAH) domain; C-5 cytosine methyltransferase [Interproscan].


Gene families : OG_01_0000605 (OrthoFinder) Phylogenetic Tree(s): OG0000605_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_78173
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001366.1 tig00001366_g8376.t1 Chromatin organisation.DNA methylation.RNA-independent... 0.02 OrthoFinder
Cre10.g461750 30790124 Chromatin organisation.DNA methylation.RNA-independent... 0.07 OrthoFinder
Cz08g20120.t1 No alias DNA (cytosine-5)-methyltransferase 1, replication foci... 0.04 OrthoFinder
Cz14g11270.t1 No alias C-5 cytosine methyltransferase [Interproscan]. 0.08 OrthoFinder
Dusal.0396s00005.1 33198509 C-5 cytosine methyltransferase [Interproscan]. 0.02 OrthoFinder
Dusal.3311s00001.1 33199086 C-5 cytosine methyltransferase [Interproscan]. 0.02 OrthoFinder
EOD10746 No alias C-5 cytosine methyltransferase [Interproscan]. 0.01 OrthoFinder
EOD21882 No alias C-5 cytosine methyltransferase; DNA... 0.05 OrthoFinder
Vocar.0029s0030.1 32887399 DNA (cytosine-5)-methyltransferase 1, replication foci... 0.03 OrthoFinder
lcl|BLLF01000022.1_cds_GFH06104.1_581 HaLaN_00677, GFH06104 Cytosine-specific methyltransferase 0.03 OrthoFinder
lcl|BLLF01000022.1_cds_GFH06107.1_584 HaLaN_00680, GFH06107 Cytosine-specific methyltransferase 0.01 OrthoFinder
lcl|BLLF01001782.1_cds_GFH21213.1_15690 HaLaN_18470, GFH21213 DNA (cytosine-5)-methyltransferase 0.03 OrthoFinder
lcl|BLLF01001782.1_cds_GFH21214.1_15691 HaLaN_18471, GFH21214 Cytosine-specific methyltransferase 0.05 OrthoFinder
lcl|BLLF01002836.1_cds_GFH25512.1_19989 HaLaN_23491, GFH25512 BTB POZ and MATH domain-containing 2-like isoform B 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58513.1_7712 PRW58513 DNA (cytosine-5)-methyltransferase 1-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
BP GO:0010639 negative regulation of organelle organization IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032780 negative regulation of ATPase activity IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033044 regulation of chromosome organization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
CC GO:0042555 MCM complex IEP Enrichment
BP GO:0043086 negative regulation of catalytic activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043462 regulation of ATPase activity IEP Enrichment
BP GO:0044092 negative regulation of molecular function IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0050790 regulation of catalytic activity IEP Enrichment
BP GO:0051095 regulation of helicase activity IEP Enrichment
BP GO:0051097 negative regulation of helicase activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0065009 regulation of molecular function IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
BP GO:1905462 regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905463 negative regulation of DNA duplex unwinding IEP Enrichment
BP GO:1905774 regulation of DNA helicase activity IEP Enrichment
BP GO:1905775 negative regulation of DNA helicase activity IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
BP GO:2001251 negative regulation of chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR001025 BAH_dom 961 1118
IPR001025 BAH_dom 793 891
IPR001525 C5_MeTfrase 1200 1629
IPR022702 Cytosine_MeTrfase1_RFD 429 596
IPR022702 Cytosine_MeTrfase1_RFD 122 254
No external refs found!