1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00000842.28

Cpa|evm.model.tig00000842.28 (tig00000842_g4847.t1)


Aliases : tig00000842_g4847.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS20 component


Gene families : OG_01_0003147 (OrthoFinder) Phylogenetic Tree(s): OG0003147_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000842.28
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre16.g660150 30777532 Protein biosynthesis.cytosolic ribosome.small subunit... 0.28 OrthoFinder
Cz02g17070.t1 No alias Ribosomal protein S10 domain [Interproscan]. 0.32 OrthoFinder
Dusal.0043s00003.1 33199620 Ribosomal protein S10 domain [Interproscan]. 0.13 OrthoFinder
EOD09635 No alias Ribosomal protein S10 domain [Interproscan]. 0.16 OrthoFinder
OT_03G01040.1 No alias Ribosomal protein S10 domain [Interproscan]. 0.19 OrthoFinder
PTI_31G00020.1 No alias Ribosomal protein S10 domain [Interproscan]. 0.12 OrthoFinder
Sro143_g066550.1 Contig3754.g28761 40S ribosomal protein S20 0.43 OrthoFinder
SymbC1.scaffold2016.8 2016.8 Ribosomal protein S10 domain [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold3818.4 3818.4 Ribosomal protein S10 domain [Interproscan]. 0.03 OrthoFinder
TP04G01100.1 No alias Ribosomal protein S10 domain [Interproscan]. 0.07 OrthoFinder
Vocar.0004s0092.1 32889737 Ribosomal protein S10 domain [Interproscan]. 0.17 OrthoFinder
XM_002501663.1 MICPUN_57744, 57744 Ribosomal protein S10 domain [Interproscan]. 0.29 OrthoFinder
XM_003062597.1 MicpuC2_35904, 35904 Ribosomal protein S10 domain [Interproscan]. 0.14 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51058.1_1171 PRW51058 Ribosomal S1 0.17 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499872.1_8825 KAA8499872 40S ribosomal protein S20 0.16 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 21 115
No external refs found!