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  5. Transcript_contig_68420

Transcript_contig_68420 (68420)


Aliases : 68420

Description : Mitochondrial degradasome RNA helicase subunit, C-terminal domain; Helicase, C-terminal; Suv3, C-terminal domain 1 [Interproscan].


Gene families : OG_01_0002222 (OrthoFinder) Phylogenetic Tree(s): OG0002222_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_68420
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Cz12g02020.t1 No alias Helicase, C-terminal; Suv3, C-terminal domain 1 [Interproscan]. 0.01 OrthoFinder
XM_002503143.1 MICPUN_82395, 82395 Mitochondrial degradasome RNA helicase subunit,... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0003997 acyl-CoA oxidase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005777 peroxisome IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006635 fatty acid beta-oxidation IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
BP GO:0009062 fatty acid catabolic process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019395 fatty acid oxidation IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034440 lipid oxidation IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
CC GO:0042579 microbody IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0044242 cellular lipid catabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
MF GO:0097020 COPII receptor activity IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
InterPro domains Description Start Stop
IPR022192 SUV3_C 482 530
IPR041082 Suv3_C_1 417 460
IPR001650 Helicase_C 228 333
No external refs found!