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  5. Cpa|evm.model.tig00000823.19

Cpa|evm.model.tig00000823.19 (tig00000823_g4546.t1)


Aliases : tig00000823_g4546.t1

Description : Cell cycle.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.RPA1 component


Gene families : OG_01_0000974 (OrthoFinder) Phylogenetic Tree(s): OG0000974_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000823.19
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
Cre16.g651000 30777595 Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.04 OrthoFinder
Cre17.g718850 30781874 Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.03 OrthoFinder
Cz03g15270.t1 No alias Replication factor A, C-terminal; Replication factor-A... 0.04 OrthoFinder
Cz16g10020.t1 No alias Replication protein A, OB domain; Domain of unknown... 0.03 OrthoFinder
Dusal.0019s00033.1 33192542 Domain of unknown function DUF223; Replication factor-A... 0.02 OrthoFinder
Dusal.0019s00034.1 33192532 Replication factor A, C-terminal [Interproscan]. 0.02 OrthoFinder
Dusal.0522s00008.1 33190764 Replication protein A, OB domain; Replication factor A,... 0.03 OrthoFinder
EOD05089 No alias Replication factor-A protein 1, N-terminal; Replication... 0.02 OrthoFinder
EOD40586 No alias Replication factor-A protein 1, N-terminal; Replication... 0.03 OrthoFinder
OT_15G01170.1 No alias Replication factor-A protein 1, N-terminal; Zinc finger,... 0.03 OrthoFinder
OT_18G01480.1 No alias Replication factor A, C-terminal; Replication protein A,... 0.03 OrthoFinder
PTI_15G03000.1 No alias Replication protein A, OB domain; Replication factor-A... 0.02 OrthoFinder
Sro773_g200410.1 Contig1379.g12684 Replication protein A 70 kDa DNA-binding subunit 0.02 OrthoFinder
Sro944_g222890.1 Contig4161.g31781 Replication protein A 70 kDa DNA-binding subunit 0.02 OrthoFinder
Transcript_contig_58809 58809 Replication factor-A protein 1, N-terminal; OB-fold... 0.02 OrthoFinder
Transcript_contig_79125 79125 Replication factor A, C-terminal [Interproscan]. 0.02 OrthoFinder
Vocar.0032s0065.1 32893746 Replication factor A, C-terminal; Domain of unknown... 0.02 OrthoFinder
XM_002501123.1 MICPUN_57417, 57417 Replication factor A, C-terminal; OB-fold nucleic acid... 0.03 OrthoFinder
XM_003064552.1 MicpuC2_54461, 54461 Replication protein A, OB domain; Replication factor A,... 0.02 OrthoFinder
lcl|BLLF01001291.1_cds_GFH18369.1_12846 HaLaN_15164, GFH18369 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59082.1_7003 PRW59082 Replication A 70 kDa DNA-binding subunit A-like 0.03 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20700.1_5289 PRW20700 Replication A 70 kDa DNA-binding subunit B 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR007199 Rep_factor-A_N 5 98
IPR004365 NA-bd_OB_tRNA 191 277
IPR031657 REPA_OB_2 302 351
No external refs found!