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Aliases : tig00000823_g4546.t1
Description : Replication protein A 70 kDa DNA-binding subunit E OS=Arabidopsis thaliana
Gene families : OG_01_0000974 (OrthoFinder) Phylogenetic Tree(s): OG0000974_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000823.18 | |
| Cluster | HCCA: Cluster_156 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre16.g651000 | 30777595 | Cell cycle.mitosis and meiosis.meiotic recombination.DNA... | 0.08 | OrthoFinder | |
| Cz16g10020.t1 | No alias | Replication protein A, OB domain; Domain of unknown... | 0.04 | OrthoFinder | |
| Dusal.0019s00033.1 | 33192542 | Domain of unknown function DUF223; Replication factor-A... | 0.05 | OrthoFinder | |
| Dusal.0019s00034.1 | 33192532 | Replication factor A, C-terminal [Interproscan]. | 0.08 | OrthoFinder | |
| EOD33894 | No alias | Replication factor A, C-terminal; Replication protein A,... | 0.02 | OrthoFinder | |
| EOD40586 | No alias | Replication factor-A protein 1, N-terminal; Replication... | 0.07 | OrthoFinder | |
| OT_15G01170.1 | No alias | Replication factor-A protein 1, N-terminal; Zinc finger,... | 0.03 | OrthoFinder | |
| OT_18G01480.1 | No alias | Replication factor A, C-terminal; Replication protein A,... | 0.03 | OrthoFinder | |
| Sro773_g200410.1 | Contig1379.g12684 | Replication protein A 70 kDa DNA-binding subunit | 0.05 | OrthoFinder | |
| Vocar.0032s0065.1 | 32893746 | Replication factor A, C-terminal; Domain of unknown... | 0.03 | OrthoFinder | |
| XM_002501123.1 | MICPUN_57417, 57417 | Replication factor A, C-terminal; OB-fold nucleic acid... | 0.04 | OrthoFinder | |
| XM_003064552.1 | MicpuC2_54461, 54461 | Replication protein A, OB domain; Replication factor A,... | 0.02 | OrthoFinder | |
| lcl|BLLF01001291.1_cds_GFH18369.1_12846 | HaLaN_15164, GFH18369 | Hypothetical protein | 0.05 | OrthoFinder | |
| lcl|LHPG02000022.1_cds_PRW20700.1_5289 | PRW20700 | Replication A 70 kDa DNA-binding subunit B | 0.05 | OrthoFinder | |
| lcl|VRMN01000003.1_cds_KAA8495307.1_1305 | KAA8495307 | Replication factor A protein 1 | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000075 | cell cycle checkpoint signaling | IEP | Enrichment |
| BP | GO:0000077 | DNA damage checkpoint signaling | IEP | Enrichment |
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Enrichment |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Enrichment |
| MF | GO:0000339 | RNA cap binding | IEP | Enrichment |
| MF | GO:0000340 | RNA 7-methylguanosine cap binding | IEP | Enrichment |
| CC | GO:0000776 | kinetochore | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003896 | DNA primase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Enrichment |
| CC | GO:0005694 | chromosome | IEP | Enrichment |
| CC | GO:0005815 | microtubule organizing center | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006260 | DNA replication | IEP | Enrichment |
| BP | GO:0006270 | DNA replication initiation | IEP | Enrichment |
| BP | GO:0006275 | regulation of DNA replication | IEP | Enrichment |
| BP | GO:0006401 | RNA catabolic process | IEP | Enrichment |
| BP | GO:0006950 | response to stress | IEP | Enrichment |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Enrichment |
| BP | GO:0007346 | regulation of mitotic cell cycle | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009262 | deoxyribonucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009263 | deoxyribonucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0010564 | regulation of cell cycle process | IEP | Enrichment |
| BP | GO:0010948 | negative regulation of cell cycle process | IEP | Enrichment |
| BP | GO:0010965 | regulation of mitotic sister chromatid separation | IEP | Enrichment |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Enrichment |
| BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | Enrichment |
| BP | GO:0031144 | proteasome localization | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Enrichment |
| BP | GO:0031503 | protein-containing complex localization | IEP | Enrichment |
| BP | GO:0031570 | DNA integrity checkpoint signaling | IEP | Enrichment |
| BP | GO:0033043 | regulation of organelle organization | IEP | Enrichment |
| BP | GO:0033044 | regulation of chromosome organization | IEP | Enrichment |
| BP | GO:0033045 | regulation of sister chromatid segregation | IEP | Enrichment |
| BP | GO:0033554 | cellular response to stress | IEP | Enrichment |
| BP | GO:0034613 | cellular protein localization | IEP | Enrichment |
| BP | GO:0034629 | cellular protein-containing complex localization | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Enrichment |
| BP | GO:0042770 | signal transduction in response to DNA damage | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | Enrichment |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Enrichment |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Enrichment |
| BP | GO:0050789 | regulation of biological process | IEP | Enrichment |
| BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
| BP | GO:0050896 | response to stimulus | IEP | Enrichment |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Enrichment |
| BP | GO:0051716 | cellular response to stimulus | IEP | Enrichment |
| BP | GO:0051726 | regulation of cell cycle | IEP | Enrichment |
| BP | GO:0051983 | regulation of chromosome segregation | IEP | Enrichment |
| BP | GO:0065007 | biological regulation | IEP | Enrichment |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| CC | GO:0099080 | supramolecular complex | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Enrichment |
| BP | GO:1901988 | negative regulation of cell cycle phase transition | IEP | Enrichment |
| BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | Enrichment |
| BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | Enrichment |
| BP | GO:1905818 | regulation of chromosome separation | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| No external refs found! |