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  5. Transcript_contig_64488

Transcript_contig_64488 (64488)


Aliases : 64488

Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000615 (OrthoFinder) Phylogenetic Tree(s): OG0000615_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_64488
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000789.15 tig00000789_g4108.t1 Helicase and polymerase-containing protein TEBICHI... 0.01 OrthoFinder
Cre08.g384390 30774104 Helicase and polymerase-containing protein TEBICHI... 0.01 OrthoFinder
Cre16.g664301 30777592 DNA damage response.DNA repair polymerase activities.DNA... 0.02 OrthoFinder
EOD27749 No alias Putative DNA repair POLQ protein [Ensembl]. 0.02 OrthoFinder
EOD35962 No alias DNA polymerase v [Ensembl]. 0.01 OrthoFinder
OT_09G03930.1 No alias Helicase, C-terminal; DNA-directed DNA polymerase,... 0.01 OrthoFinder
XM_002507327.1 MICPUN_55565, 55565 Helicase, C-terminal; DNA-directed DNA polymerase,... 0.02 OrthoFinder
XM_003055308.1 MicpuC2_49885, 49885 Helicase/polymerase domain-containing protein 0.02 OrthoFinder
lcl|BLLF01000823.1_cds_GFH15236.1_9713 HaLaN_11430, GFH15236 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 221 363
IPR011545 DEAD/DEAH_box_helicase_dom 22 144
No external refs found!