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  5. Cpa|evm.model.tig00000802.67

Cpa|evm.model.tig00000802.67 (tig00000802_g4315.t2)


Aliases : tig00000802_g4315.t2

Description : Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000802.67
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001107.27 tig00001107_g7110.t1 No description available 0.05 OrthoFinder
Cre03.g179300 30786668 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cre07.g325700 30774388 ATP-dependent helicase BRM OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz10g27160.t1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Dusal.0047s00031.1 33194295 Helicase, C-terminal; SLIDE domain; ISWI, HAND domain;... 0.04 OrthoFinder
Dusal.0357s00004.1 33189829 SNF2-related, N-terminal domain; Helicase, C-terminal;... 0.03 OrthoFinder
Dusal.0752s00003.1 33199467 HEAT-like repeat [Interproscan]. 0.02 OrthoFinder
Dusal.1946s00001.1 33193641 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD17057 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.01 OrthoFinder
EOD28310 No alias Chromodomain helicase DNA binding protein [Ensembl]. 0.01 OrthoFinder
EOD38452 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
PTI_04G04910.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.02 OrthoFinder
Sro2_g001340.1 Contig467.g6292 CHD3-type chromatin-remodeling factor PICKLE 0.01 OrthoFinder
XM_003055229.1 MicpuC2_12258, 12258 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.04 OrthoFinder
XM_003062178.1 MicpuC2_21039, 21039 SNF2 super family 0.02 OrthoFinder
XM_003062821.1 MicpuC2_52710, 52710 FY-rich, N-terminal; Helicase, C-terminal; FY-rich,... 0.02 OrthoFinder
lcl|BLLF01000141.1_cds_GFH08153.1_2630 HaLaN_03070, GFH08153 Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57711.1_8458 PRW57711 CHROMATIN REMODELING 5 isoform A 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33099.1_3518 PRW33099 SNF2 family DNA-dependent ATPase 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 914 966
IPR000330 SNF2_N 634 830
No external refs found!