- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : tig00000076_g2367.t1
Description : Cyclin-A2-1 OS=Oryza sativa subsp. japonica
Gene families : OG_01_0000476 (OrthoFinder) Phylogenetic Tree(s): OG0000476_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000076.67 | |
| Cluster | HCCA: Cluster_40 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz01g07180.t1 | No alias | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.04 | OrthoFinder | |
| Cz05g21230.t1 | No alias | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.03 | OrthoFinder | |
| Cz08g32050.t1 | No alias | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.02 | OrthoFinder | |
| Cz15g07190.t1 | No alias | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.04 | OrthoFinder | |
| Dusal.0008s00039.1 | 33198871 | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.09 | OrthoFinder | |
| Dusal.0151s00013.1 | 33191983 | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0268s00009.1 | 33190603 | Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan]. | 0.05 | OrthoFinder | |
| EOD13446 | No alias | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.06 | OrthoFinder | |
| EOD40142 | No alias | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.04 | OrthoFinder | |
| OT_01G06190.1 | No alias | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.06 | OrthoFinder | |
| PTI_09G01170.1 | No alias | Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_09G03600.1 | No alias | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_33G00170.1 | No alias | Cyclin, C-terminal domain; Cyclin, N-terminal [Interproscan]. | 0.02 | OrthoFinder | |
| Sro251_g099220.1 | Contig687.g8002 | B-type cyclin | 0.05 | OrthoFinder | |
| Sro331_g119100.1 | Contig3186.g25147 | B-type cyclin | 0.02 | OrthoFinder | |
| Sro70_g038790.1 | CYCB1 | G2/mitotic-specific cyclin | 0.01 | OrthoFinder | |
| TP04G02890.1 | No alias | Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan]. | 0.02 | OrthoFinder | |
| TP04G05450.1 | No alias | Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan]. | 0.03 | OrthoFinder | |
| TP10G00850.1 | No alias | Cyclin, N-terminal; Cyclin, C-terminal domain [Interproscan]. | 0.05 | OrthoFinder | |
| XM_002508595.1 | MICPUN_95175, 95175 | Hypothetical protein (CYCB) | 0.03 | OrthoFinder | |
| XM_003062715.1 | MicpuC2_36034, 36034 | Hypothetical protein (CYCB) | 0.01 | OrthoFinder | |
| lcl|LHPG02000008.1_cds_PRW56788.1_9556 | PRW56788 | B-type cyclin isoform B | 0.05 | OrthoFinder | |
| lcl|LHPG02000008.1_cds_PRW56789.1_9557 | PRW56789 | B-type cyclin isoform A | 0.01 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8499209.1_8162 | KAA8499209 | G1/S-specific cyclin-D3 | 0.02 | OrthoFinder | |
| lcl|VRMN01000003.1_cds_KAA8495714.1_1712 | KAA8495714 | G2/mitotic-specific cyclin-A | 0.06 | OrthoFinder | |
| lcl|VRMN01000008.1_cds_KAA8492954.1_2690 | KAA8492954 | Cyclin-B2-2 | 0.08 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Enrichment |
| CC | GO:0000152 | nuclear ubiquitin ligase complex | IEP | Enrichment |
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| BP | GO:0000278 | mitotic cell cycle | IEP | Enrichment |
| MF | GO:0000339 | RNA cap binding | IEP | Enrichment |
| MF | GO:0000340 | RNA 7-methylguanosine cap binding | IEP | Enrichment |
| CC | GO:0000775 | chromosome, centromeric region | IEP | Enrichment |
| CC | GO:0000776 | kinetochore | IEP | Enrichment |
| CC | GO:0000786 | nucleosome | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003896 | DNA primase activity | IEP | Enrichment |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Enrichment |
| MF | GO:0003924 | GTPase activity | IEP | Enrichment |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005680 | anaphase-promoting complex | IEP | Enrichment |
| CC | GO:0005694 | chromosome | IEP | Enrichment |
| CC | GO:0005815 | microtubule organizing center | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006265 | DNA topological change | IEP | Enrichment |
| BP | GO:0006270 | DNA replication initiation | IEP | Enrichment |
| BP | GO:0006275 | regulation of DNA replication | IEP | Enrichment |
| BP | GO:0006325 | chromatin organization | IEP | Enrichment |
| BP | GO:0006334 | nucleosome assembly | IEP | Enrichment |
| BP | GO:0006996 | organelle organization | IEP | Enrichment |
| BP | GO:0007049 | cell cycle | IEP | Enrichment |
| BP | GO:0007346 | regulation of mitotic cell cycle | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0008276 | protein methyltransferase activity | IEP | Enrichment |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
| BP | GO:0010564 | regulation of cell cycle process | IEP | Enrichment |
| BP | GO:0010965 | regulation of mitotic sister chromatid separation | IEP | Enrichment |
| BP | GO:0016043 | cellular component organization | IEP | Enrichment |
| MF | GO:0016278 | lysine N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0016279 | protein-lysine N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Enrichment |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Enrichment |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Enrichment |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Enrichment |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Enrichment |
| MF | GO:0016853 | isomerase activity | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Enrichment |
| MF | GO:0018024 | histone-lysine N-methyltransferase activity | IEP | Enrichment |
| BP | GO:0030071 | regulation of mitotic metaphase/anaphase transition | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| BP | GO:0031144 | proteasome localization | IEP | Enrichment |
| CC | GO:0031262 | Ndc80 complex | IEP | Enrichment |
| CC | GO:0031461 | cullin-RING ubiquitin ligase complex | IEP | Enrichment |
| BP | GO:0031503 | protein-containing complex localization | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| CC | GO:0032993 | protein-DNA complex | IEP | Enrichment |
| BP | GO:0033043 | regulation of organelle organization | IEP | Enrichment |
| BP | GO:0033044 | regulation of chromosome organization | IEP | Enrichment |
| BP | GO:0033045 | regulation of sister chromatid segregation | IEP | Enrichment |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0034629 | cellular protein-containing complex localization | IEP | Enrichment |
| BP | GO:0034728 | nucleosome organization | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| MF | GO:0042054 | histone methyltransferase activity | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0044815 | DNA packaging complex | IEP | Enrichment |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Enrichment |
| BP | GO:0051276 | chromosome organization | IEP | Enrichment |
| BP | GO:0051726 | regulation of cell cycle | IEP | Enrichment |
| BP | GO:0051983 | regulation of chromosome segregation | IEP | Enrichment |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Enrichment |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Enrichment |
| BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| CC | GO:0098687 | chromosomal region | IEP | Enrichment |
| CC | GO:0099080 | supramolecular complex | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1901987 | regulation of cell cycle phase transition | IEP | Enrichment |
| BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | Enrichment |
| BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | Enrichment |
| BP | GO:1905818 | regulation of chromosome separation | IEP | Enrichment |
| No external refs found! |