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  5. Transcript_contig_61805

Transcript_contig_61805 (61805)


Aliases : 61805

Description : ABC-2 type transporter; ABC transporter-like [Interproscan].


Gene families : OG_01_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_61805
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020537.52 tig00020537_g10275.t1 ABC transporter G family member 17 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00021537.72 tig00021537_g22323.t1 ABC transporter G family member 7 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre07.g339104 30774517 ABC transporter G family member 28 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre12.g527100 30793034 ABC transporter G family member 28 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz03g11100.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Cz07g05020.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.02 OrthoFinder
Cz11g07110.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Cz12g02110.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.02 OrthoFinder
Cz12g14180.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Dusal.0048s00030.1 33189467 ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.02 OrthoFinder
EOD13137 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59820.1_6589 PRW59820 ABC ATP-binding isoform 1 0.03 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56065.1_10007 PRW56065 ABC transporter G family member 22 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498383.1_7336 KAA8498383 ABC transporter G family member 14 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498384.1_7337 KAA8498384 ABC transporter G family member 22 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493197.1_9498 KAA8493197 ABC transporter G family member 15 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493198.1_9499 KAA8493198 ABC transporter G family member 12 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004668 protein-arginine deiminase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005044 scavenger receptor activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006576 cellular biogenic amine metabolic process IEP Enrichment
BP GO:0006595 polyamine metabolic process IEP Enrichment
BP GO:0006596 polyamine biosynthetic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0009309 amine biosynthetic process IEP Enrichment
BP GO:0009445 putrescine metabolic process IEP Enrichment
BP GO:0009446 putrescine biosynthetic process IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Enrichment
BP GO:0044106 cellular amine metabolic process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 381 591
IPR003439 ABC_transporter-like_ATP-bd 81 234
No external refs found!