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Aliases : 60213
Description : Cobalamin (vitamin B12)-binding domain [Interproscan].
Gene families : OG_01_0003578 (OrthoFinder) Phylogenetic Tree(s): OG0003578_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Transcript_contig_60213 | |
| Cluster | HCCA: Cluster_156 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| PTI_06G03890.1 | No alias | Cobalamin (vitamin B12)-binding domain;... | 0.02 | OrthoFinder | |
| Sro1741_g294660.1 | Contig4311.g32512 | Methylmalonyl-CoA mutase large subunit | 0.02 | OrthoFinder | |
| lcl|LHPG02000002.1_cds_PRW60588.1_4324 | PRW60588 | Methylmalonyl-mitochondrial | 0.02 | OrthoFinder | |
| lcl|VRMN01000008.1_cds_KAA8492796.1_2532 | KAA8492796 | Putative methylmalonyl-CoA mutase, mitochondrial | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0031419 | cobalamin binding | IEA | Interproscan |
| MF | GO:0046872 | metal ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000151 | ubiquitin ligase complex | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | Enrichment |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Enrichment |
| MF | GO:0005506 | iron ion binding | IEP | Enrichment |
| MF | GO:0005507 | copper ion binding | IEP | Enrichment |
| BP | GO:0006508 | proteolysis | IEP | Enrichment |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | Enrichment |
| BP | GO:0007034 | vacuolar transport | IEP | Enrichment |
| BP | GO:0009056 | catabolic process | IEP | Enrichment |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| BP | GO:0016567 | protein ubiquitination | IEP | Enrichment |
| MF | GO:0016667 | oxidoreductase activity, acting on a sulfur group of donors | IEP | Enrichment |
| MF | GO:0016670 | oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | IEP | Enrichment |
| MF | GO:0016740 | transferase activity | IEP | Enrichment |
| MF | GO:0016746 | acyltransferase activity | IEP | Enrichment |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Enrichment |
| MF | GO:0020037 | heme binding | IEP | Enrichment |
| BP | GO:0030328 | prenylcysteine catabolic process | IEP | Enrichment |
| BP | GO:0030329 | prenylcysteine metabolic process | IEP | Enrichment |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Enrichment |
| BP | GO:0032446 | protein modification by small protein conjugation | IEP | Enrichment |
| MF | GO:0034450 | ubiquitin-ubiquitin ligase activity | IEP | Enrichment |
| BP | GO:0042219 | cellular modified amino acid catabolic process | IEP | Enrichment |
| BP | GO:0042592 | homeostatic process | IEP | Enrichment |
| CC | GO:0043190 | ATP-binding cassette (ABC) transporter complex | IEP | Enrichment |
| MF | GO:0046912 | acyltransferase, acyl groups converted into alkyl on transfer | IEP | Enrichment |
| MF | GO:0046914 | transition metal ion binding | IEP | Enrichment |
| BP | GO:0048878 | chemical homeostasis | IEP | Enrichment |
| BP | GO:0050801 | ion homeostasis | IEP | Enrichment |
| BP | GO:0055065 | metal ion homeostasis | IEP | Enrichment |
| BP | GO:0055070 | copper ion homeostasis | IEP | Enrichment |
| BP | GO:0055076 | transition metal ion homeostasis | IEP | Enrichment |
| BP | GO:0055080 | cation homeostasis | IEP | Enrichment |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Enrichment |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Enrichment |
| BP | GO:0065008 | regulation of biological quality | IEP | Enrichment |
| MF | GO:0070001 | aspartic-type peptidase activity | IEP | Enrichment |
| CC | GO:0098533 | ATPase dependent transmembrane transport complex | IEP | Enrichment |
| BP | GO:0098771 | inorganic ion homeostasis | IEP | Enrichment |
| CC | GO:0098797 | plasma membrane protein complex | IEP | Enrichment |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Enrichment |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Enrichment |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:1901575 | organic substance catabolic process | IEP | Enrichment |
| CC | GO:1902495 | transmembrane transporter complex | IEP | Enrichment |
| CC | GO:1904949 | ATPase complex | IEP | Enrichment |
| CC | GO:1990234 | transferase complex | IEP | Enrichment |
| CC | GO:1990351 | transporter complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006158 | Cobalamin-bd | 37 | 128 |
| No external refs found! |