Transcript_contig_59682 (59682)


Aliases : 59682

Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0003096 (OrthoFinder) Phylogenetic Tree(s): OG0003096_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_59682
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Cre10.g453450 30789823 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.01 OrthoFinder
Sro169_g075070.1 Contig4412.g33127 Probable small nuclear ribonucleoprotein Sm D2 0.01 OrthoFinder
TP14G02510.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
Vocar.0030s0107.1 32894543 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009143 nucleoside triphosphate catabolic process IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Enrichment
MF GO:0051920 peroxiredoxin activity IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 35 107
No external refs found!