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  5. Cpa|evm.model.tig00000769.35

Cpa|evm.model.tig00000769.35 (tig00000769_g4032.t1)


Aliases : tig00000769_g4032.t1

Description : WD repeat-containing protein 55 OS=Arabidopsis thaliana


Gene families : OG_01_0003679 (OrthoFinder) Phylogenetic Tree(s): OG0003679_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000769.35
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre02.g113250 30784983 WD repeat-containing protein 55 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz04g20140.t1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
EOD04182 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
OT_03G02230.1 No alias WD40 repeat [Interproscan]. 0.05 OrthoFinder
PTI_02G03620.1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder
Sro3376_g347390.1 Contig1744.g15536 WD repeat-containing protein 55 0.01 OrthoFinder
XM_002501272.1 MICPUN_57732, 57732 WD40 repeat [Interproscan]. 0.05 OrthoFinder
XM_003062349.1 MicpuC2_52219, 52219 WD40 repeat [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 102 119
No external refs found!