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  5. Transcript_contig_59247

Transcript_contig_59247 (59247)


Aliases : 59247

Description : LysM domain [Interproscan].


Gene families : OG_01_0006487 (OrthoFinder) Phylogenetic Tree(s): OG0006487_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_59247
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
lcl|LHPG02000001.1_cds_PRW61172.1_436 PRW61172 Lytic transglycosylase 0.08 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20783.1_5005 PRW20783 Lytic transglycosylase 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
CC GO:0005576 extracellular region IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016977 chitosanase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR018392 LysM_dom 37 82
No external refs found!