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  5. Transcript_contig_59040

Transcript_contig_59040 (59040)


Aliases : 59040

Description : Chlorophyll A-B binding protein [Interproscan].


Gene families : OG_01_0000013 (OrthoFinder) Phylogenetic Tree(s): OG0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_59040
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cre01.g066917 30788321, LHCBM1 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder
Cre03.g156900 30787808, LHCBM5 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder
Cre04.g232104 30791553, LHCBM3 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder
Cre06.g272650 30779881, LHCA8 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder
Cre06.g278213 30779171, LHCA6 Chlorophyll a-b binding protein P4, chloroplastic... 0.06 OrthoFinder
Cre06.g283050 30779127, LHCA1 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 OrthoFinder
Cre06.g283950 30779716, LHCBM4 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder
Cre06.g284250 30779962, LHCBM8 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder
Cre06.g285250 30779463, LHCBM6 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder
Cre07.g344950 30774737, LHCA9 Photosystem I chlorophyll a/b-binding protein 5,... 0.05 OrthoFinder
Cre10.g425900 30790196, LHCA5 Chlorophyll a-b binding protein 4, chloroplastic... 0.07 OrthoFinder
Cre10.g452050 30790835, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.07 OrthoFinder
Cre11.g467573 30776039, LHCA3 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 OrthoFinder
Cre12.g508750 30791684, LHCA2 Photosystem I chlorophyll a/b-binding protein 6,... 0.05 OrthoFinder
Cre12.g548400 30793460, LHCBM2 Photosynthesis.photophosphorylation.photosystem... 0.07 OrthoFinder
Cre12.g548950 30793494, LHCBM7 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder
Cre16.g673650 30777655, LHCB5 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder
Cre16.g687900 30778224, LHCA7 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 OrthoFinder
Cre17.g720250 30782643, LHCB4 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder
Cz01g23030.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
Cz02g14140.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.08 OrthoFinder
Cz03g26240.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
Cz04g04130.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
Cz04g09210.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Cz07g02100.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Cz08g11160.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
Cz09g32070.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
Cz10g10160.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
Cz12g16070.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
Cz13g03240.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz15g09060.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Cz15g17110.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Cz16g14150.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
Dusal.0008s00007.1 33198903 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
Dusal.0017s00032.1 33200485 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Dusal.0027s00004.1 33191535 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Dusal.0048s00039.1 33189457 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Dusal.0081s00007.1 33198263 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Dusal.0125s00005.1 33191827 Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Dusal.0388s00006.1 33197668 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
OT_01G04980.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
OT_02G03050.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_02G04550.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
OT_03G04590.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_03G04600.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_03G04960.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
OT_05G03910.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
OT_07G02590.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
OT_09G04490.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
OT_14G01300.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
OT_16G00460.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
OT_16G02540.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
OT_18G01270.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
PTI_17G00760.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
PTI_20G01950.1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
Sro975_g226790.1 Contig3918.g30025 B binding protein CP29 0.01 OrthoFinder
Sro98_g050410.1 Contig3362.g26333 Chloroplastic 0.02 OrthoFinder
UNPLg00080.t1 No alias Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
Vocar.0002s0071.1 32890569 Chlorophyll A-B binding protein [Interproscan]. 0.06 OrthoFinder
Vocar.0002s0281.1 32890560 Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Vocar.0007s0216.1 32888272 Chlorophyll A-B binding protein [Interproscan]. 0.05 OrthoFinder
Vocar.0011s0017.1 32895358 Chlorophyll A-B binding protein [Interproscan]. 0.01 OrthoFinder
Vocar.0012s0172.1 32895002 Chlorophyll A-B binding protein [Interproscan]. 0.04 OrthoFinder
Vocar.0014s0016.1 32888452 Chlorophyll A-B binding protein [Interproscan]. 0.07 OrthoFinder
Vocar.0016s0243.1 32897935 Chlorophyll A-B binding protein [Interproscan]. 0.02 OrthoFinder
Vocar.0018s0037.1 32898532 Chlorophyll A-B binding protein [Interproscan]. 0.03 OrthoFinder
XM_002499584.1 MICPUN_113644, 113644 Prasinophyte specific chlorophyll a/b-binding protein,... 0.03 OrthoFinder
XM_002500047.1 MICPUN_93465, 93465 Prasinophyte specific light harvesting complex protein,... 0.04 OrthoFinder
XM_002500065.1 MICPUN_104750, 104750 Prasinophyte specific chlorophyll a/b-binding protein (LHCP2.7) 0.01 OrthoFinder
XM_002500767.1 MICPUN_90184, 90184 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
XM_002501106.1 MICPUN_90394, 90394 Chlorophyll a/b-binding protein, psi-associated,... 0.04 OrthoFinder
XM_002505041.1 MICPUN_104964, 104964 Chlorophyll a/b-binding protein, psi-associated,... 0.02 OrthoFinder
XM_002507043.1 MICPUN_104693, 104693 Chlorophyll a/b-binding protein, psi-associated,... 0.03 OrthoFinder
XM_002507210.1 MICPUN_113648, 113648 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
XM_002507237.1 MICPUN_55391, 55391 Chlorophyll a/b-binding protein, chloroplast precursor (LHCA5) 0.07 OrthoFinder
XM_002507443.1 MICPUN_54950, 54950 Chlorophyll a/b-binding protein, chloroplast precursor (LHCA2) 0.03 OrthoFinder
XM_003054893.1 MicpuC2_45156, 45156 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
XM_003055372.1 MicpuC2_50023, 50023 Chlorophyll a/b-binding protein, chloroplast precursor (LHCA5) 0.03 OrthoFinder
XM_003055426.1 MicpuC2_46212, 46212 Prasinophyte specific chlorophyll a/b-binding protein (LHCP2.7) 0.02 OrthoFinder
XM_003056380.1 MicpuC2_45265, 45265 Prasinophyte specific chlorophyll a/b-binding protein,... 0.07 OrthoFinder
XM_003056382.1 MicpuC2_70884, 70884 Chlorophyll a/b-binding protein, chloroplast precursor (LHCA2) 0.03 OrthoFinder
XM_003057773.1 MicpuC2_45464, 45464 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
XM_003058148.1 MicpuC2_70880, 70880 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
XM_003059347.1 MicpuC2_49615, 49615 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
XM_003059477.1 MicpuC2_49623, 49623 Chlorophyll a/b-binding protein, psi-associated,... 0.02 OrthoFinder
XM_003061061.1 MicpuC2_70879, 70879 Prasinophyte specific chlorophyll a/b-binding protein,... 0.02 OrthoFinder
XM_003063485.1 MicpuC2_70908, 70908 Chlorophyll a/b-binding protein CP29, chloroplast... 0.05 OrthoFinder
XM_003063603.1 MicpuC2_36592, 36592 Chlorophyll a/b-binding protein CP26, chloroplast... 0.04 OrthoFinder
XM_003064530.1 MicpuC2_46049, 46049 Chlorophyll a/b-binding protein, psi-associated,... 0.02 OrthoFinder
lcl|BLLF01000146.1_cds_GFH08210.1_2687 HaLaN_03140, GFH08210 Chlorophyll a-b binding protein, chloroplastic 0.06 OrthoFinder
lcl|BLLF01000238.1_cds_GFH09479.1_3956 HaLaN_04631, GFH09479 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01000518.1_cds_GFH12589.1_7066 HaLaN_08302, GFH12589 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01000682.1_cds_GFH14061.1_8538 HaLaN_10037, GFH14061 Chlorophyll a-b binding protein, chloroplastic 0.04 OrthoFinder
lcl|BLLF01000742.1_cds_GFH14568.1_9045 HaLaN_10649, GFH14568 Chlorophyll a-b binding protein, chloroplastic 0.04 OrthoFinder
lcl|BLLF01000768.1_cds_GFH14802.1_9279 HaLaN_10920, GFH14802 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01000956.1_cds_GFH16169.1_10646 HaLaN_12540, GFH16169 Chlorophyll a-b binding protein, chloroplastic 0.01 OrthoFinder
lcl|BLLF01001042.1_cds_GFH16728.1_11205 HaLaN_13210, GFH16728 Chlorophyll a-b binding protein, chloroplastic 0.03 OrthoFinder
lcl|BLLF01001126.1_cds_GFH17296.1_11773 HaLaN_13902, GFH17296 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01001360.1_cds_GFH18804.1_13281 HaLaN_15665, GFH18804 Chlorophyll a-b binding protein, chloroplastic 0.04 OrthoFinder
lcl|BLLF01001656.1_cds_GFH20549.1_15026 HaLaN_17690, GFH20549 Chlorophyll a-b binding protein, chloroplastic 0.04 OrthoFinder
lcl|BLLF01001849.1_cds_GFH21535.1_16012 HaLaN_18860, GFH21535 Chlorophyll a-b binding protein, chloroplastic 0.06 OrthoFinder
lcl|BLLF01002251.1_cds_GFH23349.1_17826 HaLaN_20950, GFH23349 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01002496.1_cds_GFH24298.1_18775 HaLaN_22066, GFH24298 Chlorophyll a-b binding protein, chloroplastic 0.02 OrthoFinder
lcl|BLLF01002822.1_cds_GFH25467.1_19944 HaLaN_23439, GFH25467 Chlorophyll a-b binding protein, chloroplastic 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61161.1_400 PRW61161 Chlorophyll a b binding CP29 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61250.1_625 PRW61250 Light-harvesting of photosystem I 0.05 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61582.1_286 PRW61582 Cytochrome b-c1 complex subunit Rieske-mitochondrial 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59323.1_7029 PRW59323 Light-harvesting of photosystem I 0.05 OrthoFinder
lcl|LHPG02000007.1_cds_PRW56910.1_9115 PRW56910 Light-harvesting of photosystem I 0.05 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57230.1_9116 PRW57230 Light-harvesting of photosystem I 0.05 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57333.1_9090 PRW57333 Chlorophyll a b-binding apo CP26 precursor 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56009.1_10248 PRW56009 Light-harvesting of photosystem I 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56118.1_10249 PRW56118 Light harvesting complex a 0.09 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45536.1_1258 PRW45536 Light-harvesting of photosystem I 0.05 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45697.1_1257 PRW45697 Light-harvesting of photosystem I 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016829 lyase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
CC GO:0035145 exon-exon junction complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 47 210
No external refs found!