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  5. Transcript_contig_58501

Transcript_contig_58501 (58501)


Aliases : 58501

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0002452 (OrthoFinder) Phylogenetic Tree(s): OG0002452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58501
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
Cre06.g254800 30778948 RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder
Dusal.0535s00010.1 33187720 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
XM_003056846.1 MicpuC2_15496, 15496 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56016.1_10257 PRW56016 Splicing factor 3B subunit 4 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000278 mitotic cell cycle IEP Enrichment
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0097526 spliceosomal tri-snRNP complex IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
MF GO:0120227 acyl-CoA binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
MF GO:1901567 fatty acid derivative binding IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 117 187
IPR000504 RRM_dom 31 100
No external refs found!