Transcript_contig_58480 (58480)


Aliases : 58480

Description : Regulator of chromosome condensation, RCC1 [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58480
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001339.20 tig00001339_g8275.t1 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre02.g089274 30785097 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre05.g243353 30782974 No description available 0.01 OrthoFinder
Cre12.g498450 30792845 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz07g00140.t1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Cz09g14190.t1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Cz09g20160.t1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Dusal.0193s00014.1 33196100 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
EOD23616 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
EOD26777 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.04 OrthoFinder
EOD28341 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
EOD32345 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
OT_03G05800.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
OT_10G01050.1 No alias Brevis radix (BRX) domain; Regulator of chromosome... 0.03 OrthoFinder
PTI_10G02450.1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
Sro1383_g267950.1 Contig1647.g14854 RCC1 domain-containing protein 1 0.01 OrthoFinder
TP06G07370.1 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.01 OrthoFinder
XM_002504900.1 MICPUN_62560, 62560 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_002506580.1 MICPUN_64626, 64626 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_002506984.1 MICPUN_96161, 96161 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
XM_002508379.1 MICPUN_69279, 69279 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
XM_003063490.1 MicpuC2_53295, 53295 Regulator of chromosome condensation, RCC1; Ankyrin... 0.02 OrthoFinder
lcl|BLLF01000610.1_cds_GFH13424.1_7901 HaLaN_09308, GFH13424 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000025.1_cds_PRW20195.1_5746 PRW20195 RCC2-like protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 38 87
IPR000408 Reg_chr_condens 151 200
No external refs found!