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Transcript_contig_58335 (58335)


Aliases : 58335

Description : Pre-mRNA-splicing factor Isy1 [Interproscan].


Gene families : OG_01_0002783 (OrthoFinder) Phylogenetic Tree(s): OG0002783_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58335
Cluster HCCA: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
Cre10.g427150 30789885 RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder
Cz01g20100.t1 No alias Pre-mRNA-splicing factor Isy1 [Interproscan]. 0.02 OrthoFinder
PTI_05G00880.1 No alias Pre-mRNA-splicing factor Isy1 [Interproscan]. 0.01 OrthoFinder
XM_002504831.1 MICPUN_95428, 95428 Pre-mRNA-splicing factor Isy1 [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR009360 Isy1 1 257
No external refs found!