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  5. Transcript_contig_58245

Transcript_contig_58245 (58245)


Aliases : 58245

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0002214 (OrthoFinder) Phylogenetic Tree(s): OG0002214_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_58245
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000663.18 tig00000663_g2951.t1 No description available 0.02 OrthoFinder
Cre04.g226450 30791065, PRP17 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder
Cz12g25200.t1 No alias WD40 repeat [Interproscan]. 0.03 OrthoFinder
Dusal.0324s00009.1 33186994 WD40 repeat [Interproscan]. 0.01 OrthoFinder
Vocar.0049s0033.1 32886539 WD40 repeat [Interproscan]. 0.01 OrthoFinder
XM_002503801.1 MICPUN_59865, 59865 WD40 repeat [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01003385.1_cds_GFH27195.1_21672 HaLaN_25476, GFH27195 WD_REPEATS_REGION domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003856 3-dehydroquinate synthase activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005956 protein kinase CK2 complex IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 59 96
IPR001680 WD40_repeat 102 139
No external refs found!