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  5. Transcript_contig_57722

Transcript_contig_57722 (57722)


Aliases : 57722

Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0002942 (OrthoFinder) Phylogenetic Tree(s): OG0002942_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57722
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020943.85 tig00020943_g16324.t1 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.05 OrthoFinder
Cre01.g022350 30788877 DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana 0.09 OrthoFinder
Cz07g11140.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
Dusal.0659s00006.1 33197124 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD12093 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.07 OrthoFinder
OT_13G01240.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.08 OrthoFinder
PTI_08G00230.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.1 OrthoFinder
Sro1969_g308510.1 Contig3149.g24979 Dependent RNA helicase 0.1 OrthoFinder
TP16G01590.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.06 OrthoFinder
Vocar.0007s0285.1 32887858 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.04 OrthoFinder
XM_002503322.1 MICPUN_59612, 59612 Helicase 0.1 OrthoFinder
XM_003058331.1 MicpuC2_39643, 39643 Helicase 0.08 OrthoFinder
lcl|BLLF01000814.1_cds_GFH15161.1_9638 HaLaN_11338, GFH15161 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59446.1_6695 PRW59446 DEAD-box ATP-dependent RNA helicase 13 isoform A 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004133 glycogen debranching enzyme activity IEP Enrichment
MF GO:0004134 4-alpha-glucanotransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 540 626
IPR011545 DEAD/DEAH_box_helicase_dom 214 378
No external refs found!