Transcript_contig_57709 (57709)

Aliases : 57709

Description : SBP domain [Interproscan].

Gene families : OG_01_0000101 (OrthoFinder) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_57709
Cluster	HCCA: Cluster_228

Target	Alias	Description	ECC score	Gene Family Method
Cz02g40170.t1	No alias	SBP domain [Interproscan].	0.01	OrthoFinder
Vocar.0013s0255.1	32896409	SBP domain [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000021.1_cds_PRW20956.1_5003	PRW20956	Squamosa promoter-binding 8	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0018995	host cellular component	None	Extended
CC	GO:0033643	host cell part	None	Extended
CC	GO:0033646	host intracellular part	None	Extended
CC	GO:0033647	host intracellular organelle	None	Extended
CC	GO:0033648	host intracellular membrane-bounded organelle	None	Extended
CC	GO:0042025	host cell nucleus	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
MF	GO:0004222	metalloendopeptidase activity	IEP	Enrichment
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
MF	GO:0008237	metallopeptidase activity	IEP	Enrichment
MF	GO:0050661	NADP binding	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	85	157

External Links

No external refs found!